| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is pld1 [H]
Identifier: 154245009
GI number: 154245009
Start: 1215234
End: 1216247
Strand: Direct
Name: pld1 [H]
Synonym: Xaut_1060
Alternate gene names: 154245009
Gene position: 1215234-1216247 (Clockwise)
Preceding gene: 154245008
Following gene: 154245011
Centisome position: 22.89
GC content: 66.96
Gene sequence:
>1014_bases ATGGCACTCAAGGCTATCCTGCGCGGGCAACTCGGTTTTGGCGCGGCGCCCCTCGGCAACATGTTCCGGGACATCCCCGA GGCGGAGGCGCGCGCCACCGTCGAGGCGGCCTGGAATGACGGCATCCGCTACTATGACAACGCACCTTTCTACGGTGCTG GCCTCGCCGAAATCCGCATGGGCGAGATGCTGGCCGGCAAGCCGCGGGACGCGTTCGTCATCAGCACCAAGGTGGGCCGT ATCATCCTCGACGAGATCGAAGACATCAGCGCCCGCGATCTCGGGGAGAAGGGCGAGGTCTTCAAATATGGCCGCCCCAA CAAGATCGTGAACGACTATTCGGAAGACGCCACCTATCGGTCCATCGAGGACAGCCTCAAGCGCCTGAAGGTCGATCATA TCGACATCGCCTTCGTCCATGACGTGGCGCAGGACTTCTATGGCGATGAATGGCTCGGCCGGTTCGAGGAGGCGCGCAAG GGCGCCTTCCGCGCGCTAGACCGAATGCGCGATGAGGGCGTCATCAAGGCCTGGGGGCTGGGCGTCAATCGGGTCGAGCC CATCGAGCTGCTGCTGGCGCTGGACGAGCCGCGCCCCGACGGCTTCCTCCTCGCCGGGCGCTACACGCTGCTCGACCATG ACCGGGCCTTGCAGCGGGTGATGCCGATGGTTCAGGAGCGCGGCCTCGGCATCGTTGTCGGCGGCCCCTACAGCTCGGGC GCCCTCGTCGGCGGGCCCAACTTCGAGTACGCCCCCGTGACGCCTGTCATGAGCGCGCGCATCGCGGCGATCAAGGCCAT CGCCGATCGCTACGGCATCTCCATGAAGGCGGCCGGACTGCAGTTCTCGCTTGCCCATCCCGCGGTGGCCGCGGTCATTC CCGGTGCCAGCCGTCCGGAGCGGATCGCCGAGGATGGCGCCGCGCTGCGCGAAGCCATTCCTGCCGCATTCTGGGCCGAA CTGCGCGAGCGTGGCCTCGTCAATCCGGCGGCGCCGCTTCCCGTCGCAGGCTGA
Upstream 100 bases:
>100_bases TGCTGAGATCACGGGCCGGCTACTGAGGATATCCCGCACGCCGTATTTCATTCCCTGACGCCAGACATCGGGTCTGGAAG GGAATGGAAAGGTTCAGGTC
Downstream 100 bases:
>100_bases TCCTGCGATCCCGTCCCCGCCACCGCGTCCACAGGCAGCCGCCGCCGACGCGGTGGCGGCGTGCGCAGGGGAGCGTGTCG CGTGAGTGGCCTAGCCGAGC
Product: pyridoxal 4-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MALKAILRGQLGFGAAPLGNMFRDIPEAEARATVEAAWNDGIRYYDNAPFYGAGLAEIRMGEMLAGKPRDAFVISTKVGR IILDEIEDISARDLGEKGEVFKYGRPNKIVNDYSEDATYRSIEDSLKRLKVDHIDIAFVHDVAQDFYGDEWLGRFEEARK GAFRALDRMRDEGVIKAWGLGVNRVEPIELLLALDEPRPDGFLLAGRYTLLDHDRALQRVMPMVQERGLGIVVGGPYSSG ALVGGPNFEYAPVTPVMSARIAAIKAIADRYGISMKAAGLQFSLAHPAVAAVIPGASRPERIAEDGAALREAIPAAFWAE LRERGLVNPAAPLPVAG
Sequences:
>Translated_337_residues MALKAILRGQLGFGAAPLGNMFRDIPEAEARATVEAAWNDGIRYYDNAPFYGAGLAEIRMGEMLAGKPRDAFVISTKVGR IILDEIEDISARDLGEKGEVFKYGRPNKIVNDYSEDATYRSIEDSLKRLKVDHIDIAFVHDVAQDFYGDEWLGRFEEARK GAFRALDRMRDEGVIKAWGLGVNRVEPIELLLALDEPRPDGFLLAGRYTLLDHDRALQRVMPMVQERGLGIVVGGPYSSG ALVGGPNFEYAPVTPVMSARIAAIKAIADRYGISMKAAGLQFSLAHPAVAAVIPGASRPERIAEDGAALREAIPAAFWAE LRERGLVNPAAPLPVAG >Mature_336_residues ALKAILRGQLGFGAAPLGNMFRDIPEAEARATVEAAWNDGIRYYDNAPFYGAGLAEIRMGEMLAGKPRDAFVISTKVGRI ILDEIEDISARDLGEKGEVFKYGRPNKIVNDYSEDATYRSIEDSLKRLKVDHIDIAFVHDVAQDFYGDEWLGRFEEARKG AFRALDRMRDEGVIKAWGLGVNRVEPIELLLALDEPRPDGFLLAGRYTLLDHDRALQRVMPMVQERGLGIVVGGPYSSGA LVGGPNFEYAPVTPVMSARIAAIKAIADRYGISMKAAGLQFSLAHPAVAAVIPGASRPERIAEDGAALREAIPAAFWAEL RERGLVNPAAPLPVAG
Specific function: Unknown
COG id: COG0667
COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase family [H]
Homologues:
Organism=Escherichia coli, GI1788070, Length=329, Percent_Identity=24.6200607902736, Blast_Score=78, Evalue=8e-16, Organism=Caenorhabditis elegans, GI212645785, Length=301, Percent_Identity=26.2458471760797, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI24646159, Length=292, Percent_Identity=26.7123287671233, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24646155, Length=283, Percent_Identity=24.0282685512367, Blast_Score=78, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: =1.1.1.107 [H]
Molecular weight: Translated: 36703; Mature: 36572
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALKAILRGQLGFGAAPLGNMFRDIPEAEARATVEAAWNDGIRYYDNAPFYGAGLAEIRM CCCHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHH GEMLAGKPRDAFVISTKVGRIILDEIEDISARDLGEKGEVFKYGRPNKIVNDYSEDATYR HHHHCCCCCCEEEEECCCCHHHHHHHHCCHHHCCCCCCCEEECCCCCHHHHCCCCCHHHH SIEDSLKRLKVDHIDIAFVHDVAQDFYGDEWLGRFEEARKGAFRALDRMRDEGVIKAWGL HHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC GVNRVEPIELLLALDEPRPDGFLLAGRYTLLDHDRALQRVMPMVQERGLGIVVGGPYSSG CCCCCCCEEEEEEECCCCCCCEEEECEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCC ALVGGPNFEYAPVTPVMSARIAAIKAIADRYGISMKAAGLQFSLAHPAVAAVIPGASRPE EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCEEECCCCCEEEECCCCCCCH RIAEDGAALREAIPAAFWAELRERGLVNPAAPLPVAG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure ALKAILRGQLGFGAAPLGNMFRDIPEAEARATVEAAWNDGIRYYDNAPFYGAGLAEIRM CCHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHH GEMLAGKPRDAFVISTKVGRIILDEIEDISARDLGEKGEVFKYGRPNKIVNDYSEDATYR HHHHCCCCCCEEEEECCCCHHHHHHHHCCHHHCCCCCCCEEECCCCCHHHHCCCCCHHHH SIEDSLKRLKVDHIDIAFVHDVAQDFYGDEWLGRFEEARKGAFRALDRMRDEGVIKAWGL HHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC GVNRVEPIELLLALDEPRPDGFLLAGRYTLLDHDRALQRVMPMVQERGLGIVVGGPYSSG CCCCCCCEEEEEEECCCCCCCEEEECEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCC ALVGGPNFEYAPVTPVMSARIAAIKAIADRYGISMKAAGLQFSLAHPAVAAVIPGASRPE EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCEEECCCCCEEEECCCCCCCH RIAEDGAALREAIPAAFWAELRERGLVNPAAPLPVAG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA