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The map label for this gene is agmR [H]

Identifier: 154244941

GI number: 154244941

Start: 1108922

End: 1109554

Strand: Direct

Name: agmR [H]

Synonym: Xaut_0991

Alternate gene names: 154244941

Gene position: 1108922-1109554 (Clockwise)

Preceding gene: 154244939

Following gene: 154244943

Centisome position: 20.89

GC content: 66.67

Gene sequence:

>633_bases
ATGAAAATACTCATCGTTGACGATCACTCCGTTGTGCGGGAGGGCGTCGCCGCCCTGCTGCTGAGCGGGTTTGCGGGGTC
GTGTGTGCTGGAAGCCCACGATTGCGCCCGGGGCCTGGACATCGTGGACGAGCACGCGGACCTCGACATCGTGGTGCTGG
ACCTCGGCCTGCCCGGCATGGGCGGCATGTCCGCCATTCCCGAATTCGGCCGGCGCCGGCCGGCGCTGCCGGTGATCGTC
CTGTCCTCGTCCGAAAACGCCCATGACGTGAAGGAGGCGCTGGCGCTGGGCGCCCTCGGCTATGTCCCCAAATCGGCCAG
CCGCCAGACCCTGCTGGACGCCATGGAGTTCGTGCTGAAGGGCCATGTCTATGTGCCGCCCTTCACCCTTTTGCCCGACG
CCGCGCCGGTGGCGACGAGCGAGGCGGCGGAGGAGCCCGCGCCCCACCTCACGACCCGGCAGTTGGAGGTGCTGAAGCTG
CTCTCGCGCGGCCTCTCCAACAAGGAGATCGGCAACACCCTCGACCTGTCCGAGAAGACGGTGAAGGTGCACATCACCAG
CATCTTCAGGTCACTGCATGTGATCAACCGCACCCAGGCGGCGAGCGCTGCCCGCCAGGGCAACCTTATCTGA

Upstream 100 bases:

>100_bases
TTGGCCCATCTTGCCGGGCATTGCCGTCAAGATATAGATTGTGGACCGGCGATTTTCGCGCCAGCCGCTCGAAGTTCGGG
GCGTTCGGTGGTTGCCGGCC

Downstream 100 bases:

>100_bases
GCCGGGTCTCCTCCTCCACGGGTGGGGTGCGCGCGCCCTGGGCCAGCAGGTTGGTGATGGCGGCCCGGAGCTTGCTGTTG
TGGAGCGGTTTGTGGAGCAG

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MKILIVDDHSVVREGVAALLLSGFAGSCVLEAHDCARGLDIVDEHADLDIVVLDLGLPGMGGMSAIPEFGRRRPALPVIV
LSSSENAHDVKEALALGALGYVPKSASRQTLLDAMEFVLKGHVYVPPFTLLPDAAPVATSEAAEEPAPHLTTRQLEVLKL
LSRGLSNKEIGNTLDLSEKTVKVHITSIFRSLHVINRTQAASAARQGNLI

Sequences:

>Translated_210_residues
MKILIVDDHSVVREGVAALLLSGFAGSCVLEAHDCARGLDIVDEHADLDIVVLDLGLPGMGGMSAIPEFGRRRPALPVIV
LSSSENAHDVKEALALGALGYVPKSASRQTLLDAMEFVLKGHVYVPPFTLLPDAAPVATSEAAEEPAPHLTTRQLEVLKL
LSRGLSNKEIGNTLDLSEKTVKVHITSIFRSLHVINRTQAASAARQGNLI
>Mature_210_residues
MKILIVDDHSVVREGVAALLLSGFAGSCVLEAHDCARGLDIVDEHADLDIVVLDLGLPGMGGMSAIPEFGRRRPALPVIV
LSSSENAHDVKEALALGALGYVPKSASRQTLLDAMEFVLKGHVYVPPFTLLPDAAPVATSEAAEEPAPHLTTRQLEVLKL
LSRGLSNKEIGNTLDLSEKTVKVHITSIFRSLHVINRTQAASAARQGNLI

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=201, Percent_Identity=35.3233830845771, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1786747, Length=190, Percent_Identity=27.3684210526316, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787473, Length=205, Percent_Identity=32.6829268292683, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788222, Length=195, Percent_Identity=28.2051282051282, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1789937, Length=201, Percent_Identity=26.865671641791, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790102, Length=209, Percent_Identity=27.7511961722488, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22350; Mature: 22350

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILIVDDHSVVREGVAALLLSGFAGSCVLEAHDCARGLDIVDEHADLDIVVLDLGLPGM
CEEEEECCHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCHHHCCCCCEEEEEECCCCCC
GGMSAIPEFGRRRPALPVIVLSSSENAHDVKEALALGALGYVPKSASRQTLLDAMEFVLK
CCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
GHVYVPPFTLLPDAAPVATSEAAEEPAPHLTTRQLEVLKLLSRGLSNKEIGNTLDLSEKT
CCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
VKVHITSIFRSLHVINRTQAASAARQGNLI
EEEHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKILIVDDHSVVREGVAALLLSGFAGSCVLEAHDCARGLDIVDEHADLDIVVLDLGLPGM
CEEEEECCHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCHHHCCCCCEEEEEECCCCCC
GGMSAIPEFGRRRPALPVIVLSSSENAHDVKEALALGALGYVPKSASRQTLLDAMEFVLK
CCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
GHVYVPPFTLLPDAAPVATSEAAEEPAPHLTTRQLEVLKLLSRGLSNKEIGNTLDLSEKT
CCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
VKVHITSIFRSLHVINRTQAASAARQGNLI
EEEHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]