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The map label for this gene is pecT [H]

Identifier: 154244898

GI number: 154244898

Start: 1068796

End: 1069653

Strand: Reverse

Name: pecT [H]

Synonym: Xaut_0948

Alternate gene names: 154244898

Gene position: 1069653-1068796 (Counterclockwise)

Preceding gene: 154244900

Following gene: 154244895

Centisome position: 20.15

GC content: 71.33

Gene sequence:

>858_bases
ATGATAGAACATCCCCTCGACCTTGACGCGGTGCGGGCCTTCGTCCGCATCGCCGAGCTGGGCAGCTTCACGCGCGCAGC
GGAAGCCCTGCAGACCACGCAGGCGGCGGTCAGCCTGAAGCTGAAGCGTCTGGAGGAGCGGCTCGGCTGCAGGCTCCTCG
AGCGCACGCCCCGCTATGTGGAGTTGTCGGCCCGCGGCGAGGTCTTCCTGAAGGACGCTCGGGACCTCCTGGAGATGCAC
GACCGCGCCCTGGCCGCCTTCGCGCGCGCGCGCCAGCGCCTCGCCATCGGCATCAGCGACCATGTGGCGGGGCCGGAGCT
GCCGGCCCTGATTGCCCGCATGAACGCTCAGGACCCGCAACTGCTCATCGAGATCCGGATCGGATCGTCCGGCGACCTGC
TGCAGAGCTTCGACCGGCGGGAGCTCGATACGGTGATCGTCCGCCTCCATGCCGGGCGCAACGATGGGGAACTGGTGACC
GAGGAGAAGTTCGGATGGTTCGCCGCCCCGCACTGGCAGCACCGCGCGGGTGAGCCCTTGCCGCTCGCCACCATGGCCGA
GCCCTGCGGCGTGCGCGCATTAGCCGGGCAGATCCTCGATGCGGCCGGCGTGCCGTGGACGGAAATCTTCGTCGGTGGCG
GCGTGACGGCGGTGGCGGCGGCGGTGACGGCCGGGCTCGGCGTCGCCGCATTGGCACCGCGCATGCTGCCGTTCGGCGCC
GTCGACGTCGGCCGCAGGCTCAACCTGCCCGAGCTGCCGCGCCTGCCGGTGCTGCTTCACACGCGGATCAAGGATGGACG
CCCGCGCGATGCGCTCGCCGCGCTTTCCGCCGCGTTCAGGGGCGCCGTGCGGGGCTAG

Upstream 100 bases:

>100_bases
CATGTGCGGGTCCTTTCCTCGTATGGCCCGCTGCAACGTTAGACGCCGCACCATCATTTTGATAAGATATGGCAGTTGAT
ATCAGTGATAATCAATCGAA

Downstream 100 bases:

>100_bases
AGCGCTTTCCGCTCGCCCTGGATCACGGCTCTGGGCTGTTGTTTCGATGGGTGTTCGTCACGCGAACCGAAACGCAACCC
GCGTCCTTTACCGCCACCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MIEHPLDLDAVRAFVRIAELGSFTRAAEALQTTQAAVSLKLKRLEERLGCRLLERTPRYVELSARGEVFLKDARDLLEMH
DRALAAFARARQRLAIGISDHVAGPELPALIARMNAQDPQLLIEIRIGSSGDLLQSFDRRELDTVIVRLHAGRNDGELVT
EEKFGWFAAPHWQHRAGEPLPLATMAEPCGVRALAGQILDAAGVPWTEIFVGGGVTAVAAAVTAGLGVAALAPRMLPFGA
VDVGRRLNLPELPRLPVLLHTRIKDGRPRDALAALSAAFRGAVRG

Sequences:

>Translated_285_residues
MIEHPLDLDAVRAFVRIAELGSFTRAAEALQTTQAAVSLKLKRLEERLGCRLLERTPRYVELSARGEVFLKDARDLLEMH
DRALAAFARARQRLAIGISDHVAGPELPALIARMNAQDPQLLIEIRIGSSGDLLQSFDRRELDTVIVRLHAGRNDGELVT
EEKFGWFAAPHWQHRAGEPLPLATMAEPCGVRALAGQILDAAGVPWTEIFVGGGVTAVAAAVTAGLGVAALAPRMLPFGA
VDVGRRLNLPELPRLPVLLHTRIKDGRPRDALAALSAAFRGAVRG
>Mature_285_residues
MIEHPLDLDAVRAFVRIAELGSFTRAAEALQTTQAAVSLKLKRLEERLGCRLLERTPRYVELSARGEVFLKDARDLLEMH
DRALAAFARARQRLAIGISDHVAGPELPALIARMNAQDPQLLIEIRIGSSGDLLQSFDRRELDTVIVRLHAGRNDGELVT
EEKFGWFAAPHWQHRAGEPLPLATMAEPCGVRALAGQILDAAGVPWTEIFVGGGVTAVAAAVTAGLGVAALAPRMLPFGA
VDVGRRLNLPELPRLPVLLHTRIKDGRPRDALAALSAAFRGAVRG

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=261, Percent_Identity=31.8007662835249, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787601, Length=174, Percent_Identity=30.4597701149425, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788887, Length=149, Percent_Identity=34.8993288590604, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=242, Percent_Identity=27.6859504132231, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786713, Length=119, Percent_Identity=35.2941176470588, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=141, Percent_Identity=30.4964539007092, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693193, Length=269, Percent_Identity=26.3940520446097, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=146, Percent_Identity=32.1917808219178, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787879, Length=87, Percent_Identity=42.5287356321839, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30861; Mature: 30861

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEHPLDLDAVRAFVRIAELGSFTRAAEALQTTQAAVSLKLKRLEERLGCRLLERTPRYV
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
ELSARGEVFLKDARDLLEMHDRALAAFARARQRLAIGISDHVAGPELPALIARMNAQDPQ
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHCCCCCHHHHHHHHCCCCCCE
LLIEIRIGSSGDLLQSFDRRELDTVIVRLHAGRNDGELVTEEKFGWFAAPHWQHRAGEPL
EEEEEEECCCCHHHHHHHHHHHHHHEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCC
PLATMAEPCGVRALAGQILDAAGVPWTEIFVGGGVTAVAAAVTAGLGVAALAPRMLPFGA
CHHHHCCCCCHHHHHHHHHHHCCCCHHHEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCH
VDVGRRLNLPELPRLPVLLHTRIKDGRPRDALAALSAAFRGAVRG
HHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIEHPLDLDAVRAFVRIAELGSFTRAAEALQTTQAAVSLKLKRLEERLGCRLLERTPRYV
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
ELSARGEVFLKDARDLLEMHDRALAAFARARQRLAIGISDHVAGPELPALIARMNAQDPQ
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHCCCCCHHHHHHHHCCCCCCE
LLIEIRIGSSGDLLQSFDRRELDTVIVRLHAGRNDGELVTEEKFGWFAAPHWQHRAGEPL
EEEEEEECCCCHHHHHHHHHHHHHHEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCC
PLATMAEPCGVRALAGQILDAAGVPWTEIFVGGGVTAVAAAVTAGLGVAALAPRMLPFGA
CHHHHCCCCCHHHHHHHHHHHCCCCHHHEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCH
VDVGRRLNLPELPRLPVLLHTRIKDGRPRDALAALSAAFRGAVRG
HHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]