Click here to switch to the map view.

The map label for this gene is arnB [H]

Identifier: 154244775

GI number: 154244775

Start: 919974

End: 921296

Strand: Reverse

Name: arnB [H]

Synonym: Xaut_0825

Alternate gene names: 154244775

Gene position: 921296-919974 (Counterclockwise)

Preceding gene: 154244784

Following gene: 154244774

Centisome position: 17.35

GC content: 69.92

Gene sequence:

>1323_bases
GTGACTGCCTCGGCCACTGCGCATGAGCACGCCAATCGTCTCGCCATCGAGGGAGGGGAGCCGGTTCGCAAGGCGCCGCT
GCCGTGGGAATTACCCGGCGCCCACTGGATCGGCGACGAGGAGCTGGAGCTGGTCTCCCGCGTGGTGCGCGCCAAGAGCC
CCTTCCGCTTCTACGGGCCCGACCTCCAGCACATGGTGGACACCCTCGAGAAGGAATGGTGCGCCGCCTTCGGCCACAAG
CACGCGCTGGGCGTTTCCTCCGGCACGGCGGCCCTGTCCATCGCCATGTCCGCGCTTGAGATCGGCCCCGGCGACGAAGT
CCTGGTGCCCGGCTATCTGTGGGTCAGCTGCGTGAGCGCGGTGGTGCGCGCCGGCGCCATCCCGCGCCTCGTGGACGTGG
ACGACTGCTTCACCCTCGATCCCGCCGACGTGGAACGCAAGATCGGCCCCAACACCCGCGCCGCGCTGATGGTGCACATG
AGCGGGGCACCGGGGCGTGTGGCGGAGGTCGCCCGCATCTGCCGCGAGCGTGGCATCGGCCTCATCGAGGACTGCGCCCA
GACCGCCGGCTCGAGCCAGAACGGCAAGGCCGTGGGCACCTTCGGCGATGTCGGCATCTTCTCCTTCCAGCTCAACAAGA
ACATGACCTCCGGCGACGGCGGCATGGTGGTGACTGAGCGCGACGACCTGTTTCGCCGCATCGTGGCGCTGCACGACCTC
GGCTATCCGCGCAACGCCCAGGGCCGGCTCGACACCTCGGACGAGACCTGCCAGCTGTGGGGCGTCGGCGCCCGCATGTC
GGAGCTGACCGGCGCCATGTGCCTCGCCCAGATGCGCAAGCTGCCGCTGATCACCGGCGCCATGCGCACCGCCAAGTGGC
GCATCCGCGACGCGCTGGCCGGCACCCCCGGCCTCGGCTTCCGCACCATTCCGGACCCGGCGGGCGACACCGGCCCCTTC
CTCATCATGACCCTGAAGGACGAGGCCACCGCCCGCCGCTTCGTCGACGCCCTGCGCGCGGAAGGCATCGCCGGCCCGCC
CGGGTCGCTGGCCTGCCTCACCATGCGCGAATGGGGCATGCACTGGTACTCGAACATTCCGAGCCTGGTGAACAAGAGGT
CCGACAGCCGCGACGGCTTCCCCTGGACCCACCCCTCCAATGCGTTCGGTGCCGACTACAGCTATGCCGCCGGGGCCCTG
CCCCATTGCGACGAGCTGAACGCCCGCGGCGCGCTGCTGACCATCGCCTCGACGCTCACGTCGCAGGACGTGGACGACAT
CATCACCGCCATGCGCAAGGTGGCGAAAGTGGTGCTCGCGTAG

Upstream 100 bases:

>100_bases
AGGACTTGTAAGCTGCGGCGAGGCAGGAGCATAAGTACAGGAAAAATCCCGGCCTGACAGGTTTCAATCGATAAATCCGG
TACTCAGGGGAGAGCGTCAC

Downstream 100 bases:

>100_bases
AGCACTCGCCGATCGGCCCGCGTCGCAGGCCGATCGGATCACACGTTCTGTGTCCTGGATCTCGAGCGCGATCCGGGTCC
CGCATAACAAACACCTGAAA

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase; UDP-4-amino-4-deoxy-L-arabinose aminotransferase [H]

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MTASATAHEHANRLAIEGGEPVRKAPLPWELPGAHWIGDEELELVSRVVRAKSPFRFYGPDLQHMVDTLEKEWCAAFGHK
HALGVSSGTAALSIAMSALEIGPGDEVLVPGYLWVSCVSAVVRAGAIPRLVDVDDCFTLDPADVERKIGPNTRAALMVHM
SGAPGRVAEVARICRERGIGLIEDCAQTAGSSQNGKAVGTFGDVGIFSFQLNKNMTSGDGGMVVTERDDLFRRIVALHDL
GYPRNAQGRLDTSDETCQLWGVGARMSELTGAMCLAQMRKLPLITGAMRTAKWRIRDALAGTPGLGFRTIPDPAGDTGPF
LIMTLKDEATARRFVDALRAEGIAGPPGSLACLTMREWGMHWYSNIPSLVNKRSDSRDGFPWTHPSNAFGADYSYAAGAL
PHCDELNARGALLTIASTLTSQDVDDIITAMRKVAKVVLA

Sequences:

>Translated_440_residues
MTASATAHEHANRLAIEGGEPVRKAPLPWELPGAHWIGDEELELVSRVVRAKSPFRFYGPDLQHMVDTLEKEWCAAFGHK
HALGVSSGTAALSIAMSALEIGPGDEVLVPGYLWVSCVSAVVRAGAIPRLVDVDDCFTLDPADVERKIGPNTRAALMVHM
SGAPGRVAEVARICRERGIGLIEDCAQTAGSSQNGKAVGTFGDVGIFSFQLNKNMTSGDGGMVVTERDDLFRRIVALHDL
GYPRNAQGRLDTSDETCQLWGVGARMSELTGAMCLAQMRKLPLITGAMRTAKWRIRDALAGTPGLGFRTIPDPAGDTGPF
LIMTLKDEATARRFVDALRAEGIAGPPGSLACLTMREWGMHWYSNIPSLVNKRSDSRDGFPWTHPSNAFGADYSYAAGAL
PHCDELNARGALLTIASTLTSQDVDDIITAMRKVAKVVLA
>Mature_439_residues
TASATAHEHANRLAIEGGEPVRKAPLPWELPGAHWIGDEELELVSRVVRAKSPFRFYGPDLQHMVDTLEKEWCAAFGHKH
ALGVSSGTAALSIAMSALEIGPGDEVLVPGYLWVSCVSAVVRAGAIPRLVDVDDCFTLDPADVERKIGPNTRAALMVHMS
GAPGRVAEVARICRERGIGLIEDCAQTAGSSQNGKAVGTFGDVGIFSFQLNKNMTSGDGGMVVTERDDLFRRIVALHDLG
YPRNAQGRLDTSDETCQLWGVGARMSELTGAMCLAQMRKLPLITGAMRTAKWRIRDALAGTPGLGFRTIPDPAGDTGPFL
IMTLKDEATARRFVDALRAEGIAGPPGSLACLTMREWGMHWYSNIPSLVNKRSDSRDGFPWTHPSNAFGADYSYAAGALP
HCDELNARGALLTIASTLTSQDVDDIITAMRKVAKVVLA

Specific function: Catalyzes the conversion of UDP-4-keto-arabinose (UDP- Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family. ArnB subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=261, Percent_Identity=36.0153256704981, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI2367285, Length=264, Percent_Identity=31.4393939393939, Blast_Score=108, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022850
- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: =2.6.1.87 [H]

Molecular weight: Translated: 47248; Mature: 47117

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASATAHEHANRLAIEGGEPVRKAPLPWELPGAHWIGDEELELVSRVVRAKSPFRFYGP
CCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCC
DLQHMVDTLEKEWCAAFGHKHALGVSSGTAALSIAMSALEIGPGDEVLVPGYLWVSCVSA
CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHH
VVRAGAIPRLVDVDDCFTLDPADVERKIGPNTRAALMVHMSGAPGRVAEVARICRERGIG
HHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCC
LIEDCAQTAGSSQNGKAVGTFGDVGIFSFQLNKNMTSGDGGMVVTERDDLFRRIVALHDL
HHHHHHHHCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHC
GYPRNAQGRLDTSDETCQLWGVGARMSELTGAMCLAQMRKLPLITGAMRTAKWRIRDALA
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GTPGLGFRTIPDPAGDTGPFLIMTLKDEATARRFVDALRAEGIAGPPGSLACLTMREWGM
CCCCCCCEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHCH
HWYSNIPSLVNKRSDSRDGFPWTHPSNAFGADYSYAAGALPHCDELNARGALLTIASTLT
HHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHH
SQDVDDIITAMRKVAKVVLA
HCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TASATAHEHANRLAIEGGEPVRKAPLPWELPGAHWIGDEELELVSRVVRAKSPFRFYGP
CCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCC
DLQHMVDTLEKEWCAAFGHKHALGVSSGTAALSIAMSALEIGPGDEVLVPGYLWVSCVSA
CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHH
VVRAGAIPRLVDVDDCFTLDPADVERKIGPNTRAALMVHMSGAPGRVAEVARICRERGIG
HHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCC
LIEDCAQTAGSSQNGKAVGTFGDVGIFSFQLNKNMTSGDGGMVVTERDDLFRRIVALHDL
HHHHHHHHCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHC
GYPRNAQGRLDTSDETCQLWGVGARMSELTGAMCLAQMRKLPLITGAMRTAKWRIRDALA
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GTPGLGFRTIPDPAGDTGPFLIMTLKDEATARRFVDALRAEGIAGPPGSLACLTMREWGM
CCCCCCCEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHCH
HWYSNIPSLVNKRSDSRDGFPWTHPSNAFGADYSYAAGALPHCDELNARGALLTIASTLT
HHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHH
SQDVDDIITAMRKVAKVVLA
HCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA