Click here to switch to the map view.

The map label for this gene is yfjY [C]

Identifier: 154244743

GI number: 154244743

Start: 886057

End: 886443

Strand: Reverse

Name: yfjY [C]

Synonym: Xaut_0793

Alternate gene names: 154244743

Gene position: 886443-886057 (Counterclockwise)

Preceding gene: 154244744

Following gene: 154244742

Centisome position: 16.7

GC content: 62.53

Gene sequence:

>387_bases
ATGACGCGACATTTGAGGAAGCCCGCCAGCGACCCGCAGCCTCTCCGGTTCTCGGCCCAGGAGCAGGCTGTCGTCTATGA
AGCCCGCCAGATCCTGCTGCGCCACCTCAATCAGAACCCGGTTCTGTCCTCCTGGCAGGCGGTTTTGGACTATTGCGCCC
TCACCATCCGCGGCGAGGTGGAGCGCTTCCATGTCCTCTATCTCGACCGGAAGAACCGGCTCATCTCGGACGAATGCCTC
GCCATCGGTACGATCGATCATGTCCCGGTCTATCCGCGCGAGGTGCTGCGGCGCAGCCTGGCGCTCAACGCCTCCGCGCT
GATCATCGTGCACAACCACCCCACTCACCCCTTTTCAGTCACGCTGGATCACGCTCAAGCACGATGA

Upstream 100 bases:

>100_bases
CGATCCCGCGCCGCTCTCTCCGAGGCAGAGGGCGGCGCTTCTCGCCGTGACGCGGTGAAAGTCCCGGCGCCCGGCCGGCT
GCCCGTCGGGGAATACGAAC

Downstream 100 bases:

>100_bases
AACACTAGCAAAATTGCGCTTTTTTGGCATTGCGTAGTGGGGGCGGTTTTGGCAAATTGGGGGCTGTAAATGGGGTAGAA
AACGGCCCTCCGCTCCCAAC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MTRHLRKPASDPQPLRFSAQEQAVVYEARQILLRHLNQNPVLSSWQAVLDYCALTIRGEVERFHVLYLDRKNRLISDECL
AIGTIDHVPVYPREVLRRSLALNASALIIVHNHPTHPFSVTLDHAQAR

Sequences:

>Translated_128_residues
MTRHLRKPASDPQPLRFSAQEQAVVYEARQILLRHLNQNPVLSSWQAVLDYCALTIRGEVERFHVLYLDRKNRLISDECL
AIGTIDHVPVYPREVLRRSLALNASALIIVHNHPTHPFSVTLDHAQAR
>Mature_127_residues
TRHLRKPASDPQPLRFSAQEQAVVYEARQILLRHLNQNPVLSSWQAVLDYCALTIRGEVERFHVLYLDRKNRLISDECLA
IGTIDHVPVYPREVLRRSLALNASALIIVHNHPTHPFSVTLDHAQAR

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788997, Length=96, Percent_Identity=43.75, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI2367100, Length=104, Percent_Identity=41.3461538461538, Blast_Score=76, Evalue=7e-16,
Organism=Escherichia coli, GI1788312, Length=97, Percent_Identity=41.2371134020619, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI87082300, Length=99, Percent_Identity=37.3737373737374, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 14705; Mature: 14574

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRHLRKPASDPQPLRFSAQEQAVVYEARQILLRHLNQNPVLSSWQAVLDYCALTIRGEV
CCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCC
ERFHVLYLDRKNRLISDECLAIGTIDHVPVYPREVLRRSLALNASALIIVHNHPTHPFSV
EEEEEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCEEE
TLDHAQAR
EECCCCCC
>Mature Secondary Structure 
TRHLRKPASDPQPLRFSAQEQAVVYEARQILLRHLNQNPVLSSWQAVLDYCALTIRGEV
CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCC
ERFHVLYLDRKNRLISDECLAIGTIDHVPVYPREVLRRSLALNASALIIVHNHPTHPFSV
EEEEEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCEEE
TLDHAQAR
EECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA