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The map label for this gene is trbF [H]

Identifier: 154244557

GI number: 154244557

Start: 675500

End: 676189

Strand: Direct

Name: trbF [H]

Synonym: Xaut_0602

Alternate gene names: 154244557

Gene position: 675500-676189 (Clockwise)

Preceding gene: 154244556

Following gene: 154244558

Centisome position: 12.72

GC content: 68.55

Gene sequence:

>690_bases
ATGACCCCGTTCAAGCGACCTGCGGTTCATTACGGCCGCGCACCCGAGCCCGAGACGCCGTATCATCGCGCGGCCCAGGT
CTGGGACGATCGCATCGGCTCGGCCCGCGTCCAGGCGAAGAACTGGCGCCTCATGGCGTTCGGCTGCCTGGCGCTTTCGG
CCGGCCTCTCCGGGGCCCTGGCCTGGCAGGCCCTGAGCGGCTCGGTGGTGCCGTGGGTCGTCCAGGTGGACAAGCTGGGG
CTGGCGCAGGCCGTGGCACCTGCATCGTCAGATTATCGCCCCTCCGATCCCCAGATCGCCTTCCACCTCGCTCGCTTCAT
CGAGGAGGTGCGCAGCATCTCCGCCGATCCCGTCATCGTCCGGCAGAACTGGCTCAGGGCCTATGCCTACACGACGCAAG
CCGGAGCGGTTGCCCTCAACGACTATGCCCGGGCCAACGATCCCTTCGCCCGGGTCGGCAAGCAGCAGGTGGCGGTGGAG
GTCTCGAGCGTCATCCGTGCCTCGCCGGACTCCTTCCGCATCGCCTGGACCGAACGCCGCTACCAGGACGGCAGCCTCGC
CGACAACGCACGCTGGAGCGCCATCCTCACCGTCGTGGTGCAGGCGCCGCGGGACGCCGAGCGCCTCCGGGCCAATCCCC
TCGGGATCTACGTCAACGCCATCAACTGGTCGAAGGAGCTCGCACAATGA

Upstream 100 bases:

>100_bases
AGCAGGTCGCCCACGGCATCCAGACCGCGACCCACGCGGTGCGGTCCGGCGACAGCCATGGCGGCGGCTCCTCCATCTCC
CTCTCCGAAAGCGATCGTCC

Downstream 100 bases:

>100_bases
CACCGGCCATCCGCACATCCGGGAGGCCGGCGCGCCGTGTCCTCGCCTTTCCAGCTTTACGGAAATCTGGCTTGCCGCTT
CTGCTCATTTGCACCTCCAC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTPFKRPAVHYGRAPEPETPYHRAAQVWDDRIGSARVQAKNWRLMAFGCLALSAGLSGALAWQALSGSVVPWVVQVDKLG
LAQAVAPASSDYRPSDPQIAFHLARFIEEVRSISADPVIVRQNWLRAYAYTTQAGAVALNDYARANDPFARVGKQQVAVE
VSSVIRASPDSFRIAWTERRYQDGSLADNARWSAILTVVVQAPRDAERLRANPLGIYVNAINWSKELAQ

Sequences:

>Translated_229_residues
MTPFKRPAVHYGRAPEPETPYHRAAQVWDDRIGSARVQAKNWRLMAFGCLALSAGLSGALAWQALSGSVVPWVVQVDKLG
LAQAVAPASSDYRPSDPQIAFHLARFIEEVRSISADPVIVRQNWLRAYAYTTQAGAVALNDYARANDPFARVGKQQVAVE
VSSVIRASPDSFRIAWTERRYQDGSLADNARWSAILTVVVQAPRDAERLRANPLGIYVNAINWSKELAQ
>Mature_228_residues
TPFKRPAVHYGRAPEPETPYHRAAQVWDDRIGSARVQAKNWRLMAFGCLALSAGLSGALAWQALSGSVVPWVVQVDKLGL
AQAVAPASSDYRPSDPQIAFHLARFIEEVRSISADPVIVRQNWLRAYAYTTQAGAVALNDYARANDPFARVGKQQVAVEV
SSVIRASPDSFRIAWTERRYQDGSLADNARWSAILTVVVQAPRDAERLRANPLGIYVNAINWSKELAQ

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25285; Mature: 25154

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPFKRPAVHYGRAPEPETPYHRAAQVWDDRIGSARVQAKNWRLMAFGCLALSAGLSGAL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCEEEEEHHHHHHHCCCCHHH
AWQALSGSVVPWVVQVDKLGLAQAVAPASSDYRPSDPQIAFHLARFIEEVRSISADPVIV
HHHHHCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
RQNWLRAYAYTTQAGAVALNDYARANDPFARVGKQQVAVEVSSVIRASPDSFRIAWTERR
HHHHHHHHHEECCCCEEEECCHHCCCCHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCC
YQDGSLADNARWSAILTVVVQAPRDAERLRANPLGIYVNAINWSKELAQ
CCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCEEEEEEECCHHHHCC
>Mature Secondary Structure 
TPFKRPAVHYGRAPEPETPYHRAAQVWDDRIGSARVQAKNWRLMAFGCLALSAGLSGAL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCEEEEEHHHHHHHCCCCHHH
AWQALSGSVVPWVVQVDKLGLAQAVAPASSDYRPSDPQIAFHLARFIEEVRSISADPVIV
HHHHHCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
RQNWLRAYAYTTQAGAVALNDYARANDPFARVGKQQVAVEVSSVIRASPDSFRIAWTERR
HHHHHHHHHEECCCCEEEECCHHCCCCHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCC
YQDGSLADNARWSAILTVVVQAPRDAERLRANPLGIYVNAINWSKELAQ
CCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCEEEEEEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]