| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is 154244379
Identifier: 154244379
GI number: 154244379
Start: 452246
End: 454480
Strand: Direct
Name: 154244379
Synonym: Xaut_0422
Alternate gene names: NA
Gene position: 452246-454480 (Clockwise)
Preceding gene: 154244378
Following gene: 154244380
Centisome position: 8.52
GC content: 63.13
Gene sequence:
>2235_bases ATGCCGATTCCATTTCAATCCCCAAACACCCTGCGCCGCGCCCTGCATCTGACGAGCGCGCTGGTGCGGCCCTCGCTTGC CGTGCTCTGCATGGTGCCGCTCTTCACCTCCGGCGCGCGCGCGCAGAGCGCGATGGAACTGCCCACGGTGGTGGTCCGCT CCGAAACCCCATCCACCACGGCGGGAGGCGCAGCCGACGGTCCGTTCACCCCGGCCGACACCGCGACCATCTCCGGCGCG CAGGCCCAGGGCGCGACCCTCTCGACCAGCGATTCGGGTTCGCTCATCAGCCGGATTCCAGGTGGTGCGGCCTGGGGCGC CGGCGGCGTGTCGAGCCTGCCGGCGGTCAACGGCATGGGGGCGGACCGGGTCCAGGTCTCCATCAACGGCATGCTGTTCG GCCTCGCCTGCCCGAACGAGATGAATCCGCCCCTGTCCTTCGTCAACCCTGCGATGATCGCCGGGGCGCGGGTCTATATG GGCACCGCGCCGGTGAGCGTCGGCGGCGACTATACGGGCGCGAAGGTGGATGTTTCGGTCGCGCCGGCCCAGTTCACGCC GGGCCAGGCGCTGACCACCCACGGCAGCGTTTCCGGCTTCTACCGCAGCAACGGTAACGGCTATGGCGTGGATGCCAATG TCACCGTGTCCAACGAGGACACCAGCGTCACCTATACCGGCGGCTGGGCGCGGGCGAGCGACTATACGGCGGGCGATGGC ACCACCATCAAGTCCACCATGTATGAGACGCAGAACCATGCCCTGAGCATTTCGAAGAAGATCCAGGACCAGCTCTTCAC CTTTCAGATCGGCGGGCAGTTCATTCCGTCCGAGGGCTATGTCAACCAGTACATGGACCTGGTAGAGAACAAGAGCCTCT TCGGCAACGCCCGCTACGAGGGCCTGTTCGACTGGGGCAAGCTGGAAGCCACCGTATTCGCCAATCGCGTGCGGCACACC ATGGGCTTCATCGAGCCGGACAAGAGCGGCGACATGCCCATGGATACGCGCAGCACCGACCTCGGCTATGCGGTGAAGGG GACGTTCGGAGTTTCGGCCCACGACATCATCCGCCTCGGCAACGAGCTTTACTACAATAATCTTGATGATTGGTGGCCCC CGGTGGAGGGTTCCATGATGATGGGGCCGGACACCTTCATCAACATCAACAACGGCCAGCGGCTGCGCCTCGGCACCTTC GGCGAGTGGGAACGCCACATCGACGACAAGTGGACCGCGGTGTTCGGCCTGCGCAACGACATTGTCTGGATGAATACCGG AGACGTGCAGGGCTACAACGAAATGATGTACGGGCAGAACGCCGCACTGTTCAATGCGCAGGACCATGCCCGCACCGATT TCAACGTGGATGCTTCCGTGATCCTGCGCTACGAGGCCAATGAATCGAGCCTCTACGAGCTGGGTCTTGCCCGCAAGACG CGCTCGCCGAACTTCTACGAGCGTTATGCCTGGTCCACCAACGCCATGGCCATGAGCATGATCGGCTGGTTCGGCGACGG CAACGGCTATGTGGGCAATCTCGACCTCGAGCCGGAGGCGGCGCACACGGTGAGCTTCACCGCCACCTGGCACGATCCGG CGAAGAAGGTGTGGGAGCTGCGGGTCTCTCCTTATTACAGCTATGTGCTGGACTATATCGACGCCGACCGCTGCGCCCTG TCCACCTGCCCCAACCTGCCCAGCAACCTCATCACCACCAACAATTTCGTCTATCTGCAGTTCGCCAACCACGACGCCTG GCTCTATGGCGTCAACATCGACGGCAAGCTGGCGCTGTGGGATGACGCGACCTACGGCAAGGGCGCCTTTCGCGGCAGCC TGAACTTCGTGCAGGGCCAGAGGACCGATGGCGTCAACCTCTACCACATGATGCCGCTGAACGGCGTGGTGGCCATCGAC CACAGCATCGGCCACTGGTCCTCCAGCCTCGAACTGCAGCTGGTGTCCTCGAAGACGCTGGTGAGCCAGGTGCGCAACGA GCTTGAAACCTCAGCCTATGCCCTGCTCAACTTCCGCACCAGCTACGAGCTGGACATGGTGAAGGTCGATTTCGGCGTCG ATAACATCTTCGACACCAATTATGACCTGCCACTGGGTGGGGCAAACCTCGTGAACTACCAGGTGACCAGCATGATGGGA TCGTCGGCTGCGTGGGGCTACCCGGTGGCCGGCATGGGCCGCTCGTTCAACACCCGGGTCACGGTGAAGTTCTGA
Upstream 100 bases:
>100_bases CATCCCTTTGTCGCCGAAGACGTCGGAAGACGCTTGCGCGCGTGCGGCTCGTCGTAGCCGGCGCAGCGCACGTCCTGCCG TCGGCAGCCCGGACAGACCC
Downstream 100 bases:
>100_bases CGGAACGTCGGTCACAAACCACCGGGCGGCGCCTGATCCTGCGCATGGGAGGGCGCCGCTACCTCCATGTAAAAATGGGT TCCGGCTGCCTTGGTTCAGT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB Dependent Receptor; NB-Dependent Receptor Protein; Outer Membrane Protein C; NB-Dependent Receptor Domain Protein; Outer Membrane Protein; NB-Dependent Copper Receptor; NB-Dependent Receptor Plug; Outer Membrane Insertion C-Terminal Signal; Outer Membrane Receptor Protein; IMP Dehydrogenase/GMP Reductase; Outer Membrane Protein NosA; NB-Dependent Copper Receptor Protein; Iron Complex Outermembrane Recepter Protein; Nb-Dependent Receptor; Outer Membrane Receptor Proteins
Number of amino acids: Translated: 744; Mature: 743
Protein sequence:
>744_residues MPIPFQSPNTLRRALHLTSALVRPSLAVLCMVPLFTSGARAQSAMELPTVVVRSETPSTTAGGAADGPFTPADTATISGA QAQGATLSTSDSGSLISRIPGGAAWGAGGVSSLPAVNGMGADRVQVSINGMLFGLACPNEMNPPLSFVNPAMIAGARVYM GTAPVSVGGDYTGAKVDVSVAPAQFTPGQALTTHGSVSGFYRSNGNGYGVDANVTVSNEDTSVTYTGGWARASDYTAGDG TTIKSTMYETQNHALSISKKIQDQLFTFQIGGQFIPSEGYVNQYMDLVENKSLFGNARYEGLFDWGKLEATVFANRVRHT MGFIEPDKSGDMPMDTRSTDLGYAVKGTFGVSAHDIIRLGNELYYNNLDDWWPPVEGSMMMGPDTFININNGQRLRLGTF GEWERHIDDKWTAVFGLRNDIVWMNTGDVQGYNEMMYGQNAALFNAQDHARTDFNVDASVILRYEANESSLYELGLARKT RSPNFYERYAWSTNAMAMSMIGWFGDGNGYVGNLDLEPEAAHTVSFTATWHDPAKKVWELRVSPYYSYVLDYIDADRCAL STCPNLPSNLITTNNFVYLQFANHDAWLYGVNIDGKLALWDDATYGKGAFRGSLNFVQGQRTDGVNLYHMMPLNGVVAID HSIGHWSSSLELQLVSSKTLVSQVRNELETSAYALLNFRTSYELDMVKVDFGVDNIFDTNYDLPLGGANLVNYQVTSMMG SSAAWGYPVAGMGRSFNTRVTVKF
Sequences:
>Translated_744_residues MPIPFQSPNTLRRALHLTSALVRPSLAVLCMVPLFTSGARAQSAMELPTVVVRSETPSTTAGGAADGPFTPADTATISGA QAQGATLSTSDSGSLISRIPGGAAWGAGGVSSLPAVNGMGADRVQVSINGMLFGLACPNEMNPPLSFVNPAMIAGARVYM GTAPVSVGGDYTGAKVDVSVAPAQFTPGQALTTHGSVSGFYRSNGNGYGVDANVTVSNEDTSVTYTGGWARASDYTAGDG TTIKSTMYETQNHALSISKKIQDQLFTFQIGGQFIPSEGYVNQYMDLVENKSLFGNARYEGLFDWGKLEATVFANRVRHT MGFIEPDKSGDMPMDTRSTDLGYAVKGTFGVSAHDIIRLGNELYYNNLDDWWPPVEGSMMMGPDTFININNGQRLRLGTF GEWERHIDDKWTAVFGLRNDIVWMNTGDVQGYNEMMYGQNAALFNAQDHARTDFNVDASVILRYEANESSLYELGLARKT RSPNFYERYAWSTNAMAMSMIGWFGDGNGYVGNLDLEPEAAHTVSFTATWHDPAKKVWELRVSPYYSYVLDYIDADRCAL STCPNLPSNLITTNNFVYLQFANHDAWLYGVNIDGKLALWDDATYGKGAFRGSLNFVQGQRTDGVNLYHMMPLNGVVAID HSIGHWSSSLELQLVSSKTLVSQVRNELETSAYALLNFRTSYELDMVKVDFGVDNIFDTNYDLPLGGANLVNYQVTSMMG SSAAWGYPVAGMGRSFNTRVTVKF >Mature_743_residues PIPFQSPNTLRRALHLTSALVRPSLAVLCMVPLFTSGARAQSAMELPTVVVRSETPSTTAGGAADGPFTPADTATISGAQ AQGATLSTSDSGSLISRIPGGAAWGAGGVSSLPAVNGMGADRVQVSINGMLFGLACPNEMNPPLSFVNPAMIAGARVYMG TAPVSVGGDYTGAKVDVSVAPAQFTPGQALTTHGSVSGFYRSNGNGYGVDANVTVSNEDTSVTYTGGWARASDYTAGDGT TIKSTMYETQNHALSISKKIQDQLFTFQIGGQFIPSEGYVNQYMDLVENKSLFGNARYEGLFDWGKLEATVFANRVRHTM GFIEPDKSGDMPMDTRSTDLGYAVKGTFGVSAHDIIRLGNELYYNNLDDWWPPVEGSMMMGPDTFININNGQRLRLGTFG EWERHIDDKWTAVFGLRNDIVWMNTGDVQGYNEMMYGQNAALFNAQDHARTDFNVDASVILRYEANESSLYELGLARKTR SPNFYERYAWSTNAMAMSMIGWFGDGNGYVGNLDLEPEAAHTVSFTATWHDPAKKVWELRVSPYYSYVLDYIDADRCALS TCPNLPSNLITTNNFVYLQFANHDAWLYGVNIDGKLALWDDATYGKGAFRGSLNFVQGQRTDGVNLYHMMPLNGVVAIDH SIGHWSSSLELQLVSSKTLVSQVRNELETSAYALLNFRTSYELDMVKVDFGVDNIFDTNYDLPLGGANLVNYQVTSMMGS SAAWGYPVAGMGRSFNTRVTVKF
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80941; Mature: 80810
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIPFQSPNTLRRALHLTSALVRPSLAVLCMVPLFTSGARAQSAMELPTVVVRSETPSTT CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCC AGGAADGPFTPADTATISGAQAQGATLSTSDSGSLISRIPGGAAWGAGGVSSLPAVNGMG CCCCCCCCCCCCCCCEECCCCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC ADRVQVSINGMLFGLACPNEMNPPLSFVNPAMIAGARVYMGTAPVSVGGDYTGAKVDVSV CCEEEEEEEEEEEEEECCCCCCCCHHHCCHHHHCCCEEEEECCCEECCCCCCCCEEEEEE APAQFTPGQALTTHGSVSGFYRSNGNGYGVDANVTVSNEDTSVTYTGGWARASDYTAGDG ECCCCCCCCEEEECCCEEEEEECCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCC TTIKSTMYETQNHALSISKKIQDQLFTFQIGGQFIPSEGYVNQYMDLVENKSLFGNARYE CEEEHHHHHCCCCEEEHHHHHHHCEEEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCC GLFDWGKLEATVFANRVRHTMGFIEPDKSGDMPMDTRSTDLGYAVKGTFGVSAHDIIRLG CEECCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCC NELYYNNLDDWWPPVEGSMMMGPDTFININNGQRLRLGTFGEWERHIDDKWTAVFGLRND CHHEECCCHHHCCCCCCCEEECCCEEEECCCCCEEEECCCCCHHHHCCCCEEEEEECCCC IVWMNTGDVQGYNEMMYGQNAALFNAQDHARTDFNVDASVILRYEANESSLYELGLARKT EEEEECCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCEEHHHHHHCC RSPNFYERYAWSTNAMAMSMIGWFGDGNGYVGNLDLEPEAAHTVSFTATWHDPAKKVWEL CCCCHHHHHCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCEEEEEEEECCCHHHHEEEE RVSPYYSYVLDYIDADRCALSTCPNLPSNLITTNNFVYLQFANHDAWLYGVNIDGKLALW ECCHHHHHHHHHHCCCHHHHHCCCCCCCCCEECCCEEEEEEECCCEEEEEEECCCEEEEE DDATYGKGAFRGSLNFVQGQRTDGVNLYHMMPLNGVVAIDHSIGHWSSSLELQLVSSKTL CCCCCCCCEEECCCEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEEEECHHHH VSQVRNELETSAYALLNFRTSYELDMVKVDFGVDNIFDTNYDLPLGGANLVNYQVTSMMG HHHHHHHHHHCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHCC SSAAWGYPVAGMGRSFNTRVTVKF CCCCCCCCCCCCCCCCCCEEEEEC >Mature Secondary Structure PIPFQSPNTLRRALHLTSALVRPSLAVLCMVPLFTSGARAQSAMELPTVVVRSETPSTT CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCC AGGAADGPFTPADTATISGAQAQGATLSTSDSGSLISRIPGGAAWGAGGVSSLPAVNGMG CCCCCCCCCCCCCCCEECCCCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC ADRVQVSINGMLFGLACPNEMNPPLSFVNPAMIAGARVYMGTAPVSVGGDYTGAKVDVSV CCEEEEEEEEEEEEEECCCCCCCCHHHCCHHHHCCCEEEEECCCEECCCCCCCCEEEEEE APAQFTPGQALTTHGSVSGFYRSNGNGYGVDANVTVSNEDTSVTYTGGWARASDYTAGDG ECCCCCCCCEEEECCCEEEEEECCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCC TTIKSTMYETQNHALSISKKIQDQLFTFQIGGQFIPSEGYVNQYMDLVENKSLFGNARYE CEEEHHHHHCCCCEEEHHHHHHHCEEEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCC GLFDWGKLEATVFANRVRHTMGFIEPDKSGDMPMDTRSTDLGYAVKGTFGVSAHDIIRLG CEECCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCC NELYYNNLDDWWPPVEGSMMMGPDTFININNGQRLRLGTFGEWERHIDDKWTAVFGLRND CHHEECCCHHHCCCCCCCEEECCCEEEECCCCCEEEECCCCCHHHHCCCCEEEEEECCCC IVWMNTGDVQGYNEMMYGQNAALFNAQDHARTDFNVDASVILRYEANESSLYELGLARKT EEEEECCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCEEHHHHHHCC RSPNFYERYAWSTNAMAMSMIGWFGDGNGYVGNLDLEPEAAHTVSFTATWHDPAKKVWEL CCCCHHHHHCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCEEEEEEEECCCHHHHEEEE RVSPYYSYVLDYIDADRCALSTCPNLPSNLITTNNFVYLQFANHDAWLYGVNIDGKLALW ECCHHHHHHHHHHCCCHHHHHCCCCCCCCCEECCCEEEEEEECCCEEEEEEECCCEEEEE DDATYGKGAFRGSLNFVQGQRTDGVNLYHMMPLNGVVAIDHSIGHWSSSLELQLVSSKTL CCCCCCCCEEECCCEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEEEECHHHH VSQVRNELETSAYALLNFRTSYELDMVKVDFGVDNIFDTNYDLPLGGANLVNYQVTSMMG HHHHHHHHHHCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHCC SSAAWGYPVAGMGRSFNTRVTVKF CCCCCCCCCCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA