BacMap

Definition	Xanthobacter autotrophicus Py2 chromosome, complete genome.
Accession	NC_009720
Length	5,308,934

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The map label for this gene is yngJ [H]

Identifier: 154244267

GI number: 154244267

Start: 318056

End: 319747

Strand: Direct

Name: yngJ [H]

Synonym: Xaut_0310

Alternate gene names: 154244267

Gene position: 318056-319747 (Clockwise)

Preceding gene: 154244266

Following gene: 154244268

Centisome position: 5.99

GC content: 68.5

Gene sequence:

>1692_bases
ATGAGCGCCAGCGCCGCCCTTCAGACCGTCGCCACCGACACACTGGATGCCGTCGCGCTCGGCCGCACGGCCACGGCGCG
GCTGGAAGCCCTGCTGGCGGAAGCCACCTCCCTGGTCAAGGCGCAGGTGACCGAGGGTGGCCGCATCTCCCCGGCGCTGC
TGGAGCGCGAGCAGCGCTCGACCCATGGCCTTGCGTGGCTCGCAACTTATGTCTTCTCGGTGCGCGAGCTGGTGCATTAT
GCCGACCGCCTCACCGAGATGGGCAAGTTCGGCGCCACCGAAAAGCTGATCGTGCAGATCGGCCTTGGCGAATACGTCGC
CCAGATTCTCGGCGGCATTCCCATGAGCCAGGGCGAGATCGTCCGCCTCGGCGACCTCTACGTCTCGGACGACACCGAGG
CCGCCCTGCGCGCCGATCCGGCCATCGCGACCCTCGCGGCCAAGGGCAATACGGCGGCGAGCCGCGCGGCGCTGGCGGAC
ATCATCCGCGGCGCCCACCCCACCGGCACCATCGGCGAAGCCGGCCTCGACGAGACCACCGAGGCCATGCGCACCGAGAT
GCACCGCTTCGTGGAGGCGGAGGTGGCTCCCCACGCCCACGAATGGCACCTGAAGAACGACTATATCCCGCTGGAGATCA
TCACCCACCTCTCCGAGATGGGCGTGTTCGGCCTCACCATCCCGGAGGAATTCGGCGGCCTCGGCCTGCCCAAGGAGGCC
ATGTGCGTGGTCACCGAGGAGCTGTCGCGCGGCTATATCGGCGTCGGCTCGCTGGGTACCCGCTCGGAAATCGCGGCGGA
ACTGATCCTCGCCGGCGGCACCGACGACCAGAAGGCCCATTACCTGCCGAAGCTCGCGGCCGGTGAGATCCTGCCCACGG
CGGTGTTCACCGAGCCCAACACCGGCTCGGACCTCGCCTCCCTTCGCACCCGCGCGGTGAAGGAGGGTGATGTCTACAAG
GTCTCCGGCAACAAGACCTGGATCACCCACCCCGTCCGCGCCGACGTTATGACGCTGCTGGTGCGCACCAATCCGGCCGA
GCCGGGCTACAAGGGCCTGTCCATCCTGCTGGCCGAGAAGCCGCGCGGCTCCGATGAGAACCCGTTCCCCGCCGAGGGCA
TGACCGGCGGCGAGATCGAGGTGCTCGGCTATCGCGGCATGAAGGAATACGAGATCGGCTTCGACGGCTTCACCGTGCCG
GCGGCCAACCTGCTGGGCGGTGAGGAGGGTCAGGGCTTCAAGCAGCTCATGACCACCTTCGAGAGCGCCCGCATCCAGAC
CGCCGCCCGCGCCGTGGGCGTGGCCCAGGCGGCCATGGAGGTGGGCCTGAAATATGCCGAGGAGCGCATCCAGTTCGGCA
AGGCCCTCATTCACTTCCCCCGCGTCGCCGACAAGATCGTGATGATGGCGGTGGAGACCATGATCGCCCGCCAGATCACC
TACTTCGCCGCCCGCGCCAAGGACGAGGGGCGCCGCACCGACCTTGAGGCCGGCATGGCCAAGCTCTTGGGCGCCCGCGT
CGCCTGGGCGGCGGCGGACAATGCGCTGCAGATCCACGGCGGCAACGGCTTCGCGCTGGAATATCCGGTGTCGCGCATCC
TGTGCGACGCGCGCATCCTCAACATCTTCGAGGGCGCGGCCGAGATCCAGGCGCAGGTGATTGCCCGCCGCCTGCTCGAC
GGCGGCAACTGA

Upstream 100 bases:

>100_bases
GTGGCGGCGCACACGGCCGCCGTAATCAGGCGTTGCTTTGGGCCGGTTCCAAGGCAAGGATAAGCCAATTCTGCAACGCA
CAATCCGGGAGAAAGCCTTC

Downstream 100 bases:

>100_bases
GGCCGGTTCCGTCGCCGGGACGCGGACGATGAGCGAGGCCGTGCTGATCGAGGATGCCCGGCCGGCGGACGAGGCCGAGT
GGCGCCGGCTCTGGGCGGGC

Product: acyl-CoA dehydrogenase domain-containing protein

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 562

Protein sequence:

>563_residues
MSASAALQTVATDTLDAVALGRTATARLEALLAEATSLVKAQVTEGGRISPALLEREQRSTHGLAWLATYVFSVRELVHY
ADRLTEMGKFGATEKLIVQIGLGEYVAQILGGIPMSQGEIVRLGDLYVSDDTEAALRADPAIATLAAKGNTAASRAALAD
IIRGAHPTGTIGEAGLDETTEAMRTEMHRFVEAEVAPHAHEWHLKNDYIPLEIITHLSEMGVFGLTIPEEFGGLGLPKEA
MCVVTEELSRGYIGVGSLGTRSEIAAELILAGGTDDQKAHYLPKLAAGEILPTAVFTEPNTGSDLASLRTRAVKEGDVYK
VSGNKTWITHPVRADVMTLLVRTNPAEPGYKGLSILLAEKPRGSDENPFPAEGMTGGEIEVLGYRGMKEYEIGFDGFTVP
AANLLGGEEGQGFKQLMTTFESARIQTAARAVGVAQAAMEVGLKYAEERIQFGKALIHFPRVADKIVMMAVETMIARQIT
YFAARAKDEGRRTDLEAGMAKLLGARVAWAAADNALQIHGGNGFALEYPVSRILCDARILNIFEGAAEIQAQVIARRLLD
GGN

Sequences:

>Translated_563_residues
MSASAALQTVATDTLDAVALGRTATARLEALLAEATSLVKAQVTEGGRISPALLEREQRSTHGLAWLATYVFSVRELVHY
ADRLTEMGKFGATEKLIVQIGLGEYVAQILGGIPMSQGEIVRLGDLYVSDDTEAALRADPAIATLAAKGNTAASRAALAD
IIRGAHPTGTIGEAGLDETTEAMRTEMHRFVEAEVAPHAHEWHLKNDYIPLEIITHLSEMGVFGLTIPEEFGGLGLPKEA
MCVVTEELSRGYIGVGSLGTRSEIAAELILAGGTDDQKAHYLPKLAAGEILPTAVFTEPNTGSDLASLRTRAVKEGDVYK
VSGNKTWITHPVRADVMTLLVRTNPAEPGYKGLSILLAEKPRGSDENPFPAEGMTGGEIEVLGYRGMKEYEIGFDGFTVP
AANLLGGEEGQGFKQLMTTFESARIQTAARAVGVAQAAMEVGLKYAEERIQFGKALIHFPRVADKIVMMAVETMIARQIT
YFAARAKDEGRRTDLEAGMAKLLGARVAWAAADNALQIHGGNGFALEYPVSRILCDARILNIFEGAAEIQAQVIARRLLD
GGN
>Mature_562_residues
SASAALQTVATDTLDAVALGRTATARLEALLAEATSLVKAQVTEGGRISPALLEREQRSTHGLAWLATYVFSVRELVHYA
DRLTEMGKFGATEKLIVQIGLGEYVAQILGGIPMSQGEIVRLGDLYVSDDTEAALRADPAIATLAAKGNTAASRAALADI
IRGAHPTGTIGEAGLDETTEAMRTEMHRFVEAEVAPHAHEWHLKNDYIPLEIITHLSEMGVFGLTIPEEFGGLGLPKEAM
CVVTEELSRGYIGVGSLGTRSEIAAELILAGGTDDQKAHYLPKLAAGEILPTAVFTEPNTGSDLASLRTRAVKEGDVYKV
SGNKTWITHPVRADVMTLLVRTNPAEPGYKGLSILLAEKPRGSDENPFPAEGMTGGEIEVLGYRGMKEYEIGFDGFTVPA
ANLLGGEEGQGFKQLMTTFESARIQTAARAVGVAQAAMEVGLKYAEERIQFGKALIHFPRVADKIVMMAVETMIARQITY
FAARAKDEGRRTDLEAGMAKLLGARVAWAAADNALQIHGGNGFALEYPVSRILCDARILNIFEGAAEIQAQVIARRLLDG
GN

Specific function: Catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=389, Percent_Identity=33.6760925449871, Blast_Score=208, Evalue=1e-53,
Organism=Homo sapiens, GI187960098, Length=388, Percent_Identity=34.5360824742268, Blast_Score=207, Evalue=2e-53,
Organism=Homo sapiens, GI4557231, Length=388, Percent_Identity=34.5360824742268, Blast_Score=207, Evalue=2e-53,
Organism=Homo sapiens, GI21361497, Length=356, Percent_Identity=36.2359550561798, Blast_Score=195, Evalue=1e-49,
Organism=Homo sapiens, GI226958414, Length=351, Percent_Identity=33.9031339031339, Blast_Score=190, Evalue=3e-48,
Organism=Homo sapiens, GI4557233, Length=420, Percent_Identity=33.5714285714286, Blast_Score=190, Evalue=3e-48,
Organism=Homo sapiens, GI4557235, Length=385, Percent_Identity=33.2467532467532, Blast_Score=184, Evalue=2e-46,
Organism=Homo sapiens, GI76496475, Length=385, Percent_Identity=33.2467532467532, Blast_Score=184, Evalue=3e-46,
Organism=Homo sapiens, GI4501859, Length=378, Percent_Identity=31.4814814814815, Blast_Score=182, Evalue=8e-46,
Organism=Homo sapiens, GI7656849, Length=387, Percent_Identity=29.9741602067183, Blast_Score=167, Evalue=4e-41,
Organism=Homo sapiens, GI4501857, Length=384, Percent_Identity=27.34375, Blast_Score=165, Evalue=1e-40,
Organism=Homo sapiens, GI4503943, Length=362, Percent_Identity=29.2817679558011, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI7669494, Length=363, Percent_Identity=28.9256198347107, Blast_Score=117, Evalue=4e-26,
Organism=Homo sapiens, GI38505218, Length=361, Percent_Identity=26.5927977839335, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI48976061, Length=300, Percent_Identity=26.6666666666667, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI211971008, Length=300, Percent_Identity=26.6666666666667, Blast_Score=91, Evalue=3e-18,
Organism=Escherichia coli, GI1786223, Length=363, Percent_Identity=28.099173553719, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI87081958, Length=359, Percent_Identity=30.08356545961, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87081702, Length=262, Percent_Identity=29.7709923664122, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17570075, Length=381, Percent_Identity=34.6456692913386, Blast_Score=211, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI17534899, Length=387, Percent_Identity=35.1421188630491, Blast_Score=205, Evalue=5e-53,
Organism=Caenorhabditis elegans, GI17569725, Length=389, Percent_Identity=34.9614395886889, Blast_Score=200, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17538396, Length=387, Percent_Identity=31.0077519379845, Blast_Score=199, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI71985184, Length=363, Percent_Identity=34.7107438016529, Blast_Score=191, Evalue=7e-49,
Organism=Caenorhabditis elegans, GI17508101, Length=387, Percent_Identity=32.2997416020672, Blast_Score=179, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI17506239, Length=377, Percent_Identity=31.2997347480106, Blast_Score=178, Evalue=8e-45,
Organism=Caenorhabditis elegans, GI17533517, Length=388, Percent_Identity=30.6701030927835, Blast_Score=172, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI17551932, Length=397, Percent_Identity=26.448362720403, Blast_Score=155, Evalue=7e-38,
Organism=Caenorhabditis elegans, GI17505929, Length=385, Percent_Identity=26.7532467532467, Blast_Score=153, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI71985192, Length=343, Percent_Identity=31.1953352769679, Blast_Score=143, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI71990804, Length=295, Percent_Identity=31.5254237288136, Blast_Score=136, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI32563615, Length=238, Percent_Identity=31.5126050420168, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17534353, Length=417, Percent_Identity=26.8585131894484, Blast_Score=121, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI71982178, Length=286, Percent_Identity=26.9230769230769, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17562446, Length=470, Percent_Identity=23.4042553191489, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17531909, Length=250, Percent_Identity=26.4, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24660351, Length=426, Percent_Identity=33.5680751173709, Blast_Score=201, Evalue=1e-51,
Organism=Drosophila melanogaster, GI21355753, Length=388, Percent_Identity=33.2474226804124, Blast_Score=194, Evalue=1e-49,
Organism=Drosophila melanogaster, GI21356377, Length=388, Percent_Identity=32.9896907216495, Blast_Score=193, Evalue=2e-49,
Organism=Drosophila melanogaster, GI24646207, Length=408, Percent_Identity=31.6176470588235, Blast_Score=186, Evalue=5e-47,
Organism=Drosophila melanogaster, GI281363737, Length=430, Percent_Identity=30.2325581395349, Blast_Score=180, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24666513, Length=383, Percent_Identity=31.5926892950392, Blast_Score=172, Evalue=6e-43,
Organism=Drosophila melanogaster, GI19920834, Length=391, Percent_Identity=28.1329923273657, Blast_Score=111, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 60198; Mature: 60066

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASAALQTVATDTLDAVALGRTATARLEALLAEATSLVKAQVTEGGRISPALLEREQRS
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
THGLAWLATYVFSVRELVHYADRLTEMGKFGATEKLIVQIGLGEYVAQILGGIPMSQGEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHCCCCCCCCCE
VRLGDLYVSDDTEAALRADPAIATLAAKGNTAASRAALADIIRGAHPTGTIGEAGLDETT
EEEEEEEECCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
EAMRTEMHRFVEAEVAPHAHEWHLKNDYIPLEIITHLSEMGVFGLTIPEEFGGLGLPKEA
HHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHCCEEEEECCHHHCCCCCCHHH
MCVVTEELSRGYIGVGSLGTRSEIAAELILAGGTDDQKAHYLPKLAAGEILPTAVFTEPN
HHHHHHHHCCCEEEECCCCCHHHHHHHHHEECCCCCCHHHHCCCHHCCCCCCEEEEECCC
TGSDLASLRTRAVKEGDVYKVSGNKTWITHPVRADVMTLLVRTNPAEPGYKGLSILLAEK
CCCHHHHHHHHHCCCCCEEEECCCCEEEECCHHHHHHHHHEECCCCCCCCCCEEEEEEEC
PRGSDENPFPAEGMTGGEIEVLGYRGMKEYEIGFDGFTVPAANLLGGEEGQGFKQLMTTF
CCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHH
ESARIQTAARAVGVAQAAMEVGLKYAEERIQFGKALIHFPRVADKIVMMAVETMIARQIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFAARAKDEGRRTDLEAGMAKLLGARVAWAAADNALQIHGGNGFALEYPVSRILCDARIL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCEEEECCHHHHHHHHHHH
NIFEGAAEIQAQVIARRLLDGGN
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SASAALQTVATDTLDAVALGRTATARLEALLAEATSLVKAQVTEGGRISPALLEREQRS
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
THGLAWLATYVFSVRELVHYADRLTEMGKFGATEKLIVQIGLGEYVAQILGGIPMSQGEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHCCCCCCCCCE
VRLGDLYVSDDTEAALRADPAIATLAAKGNTAASRAALADIIRGAHPTGTIGEAGLDETT
EEEEEEEECCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
EAMRTEMHRFVEAEVAPHAHEWHLKNDYIPLEIITHLSEMGVFGLTIPEEFGGLGLPKEA
HHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHCCEEEEECCHHHCCCCCCHHH
MCVVTEELSRGYIGVGSLGTRSEIAAELILAGGTDDQKAHYLPKLAAGEILPTAVFTEPN
HHHHHHHHCCCEEEECCCCCHHHHHHHHHEECCCCCCHHHHCCCHHCCCCCCEEEEECCC
TGSDLASLRTRAVKEGDVYKVSGNKTWITHPVRADVMTLLVRTNPAEPGYKGLSILLAEK
CCCHHHHHHHHHCCCCCEEEECCCCEEEECCHHHHHHHHHEECCCCCCCCCCEEEEEEEC
PRGSDENPFPAEGMTGGEIEVLGYRGMKEYEIGFDGFTVPAANLLGGEEGQGFKQLMTTF
CCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHH
ESARIQTAARAVGVAQAAMEVGLKYAEERIQFGKALIHFPRVADKIVMMAVETMIARQIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFAARAKDEGRRTDLEAGMAKLLGARVAWAAADNALQIHGGNGFALEYPVSRILCDARIL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCEEEECCHHHHHHHHHHH
NIFEGAAEIQAQVIARRLLDGGN
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]