| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is pdhA [H]
Identifier: 154244172
GI number: 154244172
Start: 216589
End: 219048
Strand: Direct
Name: pdhA [H]
Synonym: Xaut_0214
Alternate gene names: 154244172
Gene position: 216589-219048 (Clockwise)
Preceding gene: 154244166
Following gene: 154244173
Centisome position: 4.08
GC content: 70.77
Gene sequence:
>2460_bases ATGGACCGCCACACGTCTCATCCGCCCACGCCCTCGGCGCTCTCCACCCCCCTGCGCCCGCGCCCGGCGCCGCCGAGCGC GGGCGATCTCGCCATTCTCGCCGAGCTGGAGCGCAAGGTGCTGTGGCTGGCGAGCTGGATGATCCACAACGCCAACCACC TGCGCCCCGGCACGGACGGGCTGAAGGTGGGTGGCCATCAGGCCTCCTCGGCTTCGCTGGCCGCCATCATGAGCGCGCTC TATTTCCACGTGCTGCGCCCGGAGGACCGGGTGGCGGTGAAGCCCCACGCCAGCCCCATCTTCCACGCCATCCAATATCT GTTCGGCCGCCAGACCCGCGAGCGGCTGGAAAACTTCCGCGGCTTCAAGGGTGCCCAGTCCTACCCCTCCCGCACCAAGG ACGCGGACGACGTGGACTTCTCCACCGGCTCCGTGGGCCTCGGCGTGGCGCAGACCCTGTTTGCCAGCCTGGCGCAGGAT TATGTCCACGCCCACGGCCTCGCCGGCGACCGGCCCAAGGGGCGCATGATCGCCCTGGTGGGCGACGCGGAGCTGGACGA GGGCAACGTGTTCGAGGCCCTGCTGGAGGGCTGGAAGCACGAGGTGCGCAACACCTGGTGGATCATCGACTACAACCGCC AGAGCCTCGACGGCGTGGTGCGCGAGGGCCTCTACGAGCGCTTCACCGGCATCTTCGAGGCCATGGGCTGGCAGGTGGTC GTGCTCAAATACGGCACCCTGCAGCAGGCCGCCTTCGCCGAGCCCGGCGGGGCCGCCTTGAAAAGCTGGATCGACACCTG CCCCAATGCCGAATATTCCGCGCTCACCTTCCAGGGCGGGGCGGCCTGGCGCAAGCGCCTGATGGACGATCTCGGCGATC AGGGCGAGGTGTCCGCCCTCATCGCCCGGCGCTCGGATGCCGAGCTGTCCGCCCTGATGACCAATCTGGGTGGCCACGAC ATCGCCGCCCTCATCGCCGCTTTCGACGCCATCGACCACGACCGGCCGGTGGCCTTCCTGTGCTACACGGTGAAGGGCTT CGGCCTGCCGCTGGCCGGCCACAAGGACAACCACGCCGGCCTCATGACCCCGGCCCAGATGGAGGCCCTGCGCGCCGCCA TGGGAGTGGGCGAGGGCCGCGAATGGGAGCCCTTCGAGGGGCTGAAGCGCCCGGCGGGCGAGCTTGCCGCCTTCCTTGCG CGCGTGCCGTTCGCGCAGGGCGGCCCGCGCCGCTTCACCGACCCCGCCCTTGCCGTGCCGGCGCTGGCGCCGCCGCCCAA TCCGGTGATCTCCACCCAGGCCGGCTTCGGCCTCATCCTGCAGGACCTAGCCAAGGGCGAAAGCCAGCTTTCCGACCGCA TCGTCACCACCTCGCCGGATGTGACCGTCTCCACCAATCTGGGGCCATGGGTGAACCGGCGCGGCCTGTTCGCCCATGCG GCGCTCGCGGATGTGTTCAAGCGCGAGCGCATCCCCTCCACCTTCGCCTGGGAATTCTCGCCCAAGGGCCAGCACGTGGA GCTGGGCATCGCCGAGATGAACCTGTTCCTGGCGCTCTCGGCCTTCGGCCTCTCCCATTCCCTGTTCGGCGCGCGCCTCG TGCCGGTGGGCACGCTGTATGATCCCTTCATCTGCCGCGGCCTCGATGCGCTGAACTATGCCTGCTACCAGGACGCCCGC TTCATCCTGGTGGCGACGCCCTCCGGCATCACGCTGGCGCCCGAGGGCGGGGCGCACCAGTCCATCTCCACCCCGCTGAT CGGCATGGCGCAAGACGGCCTTGCCGCCTTCGAGCCGGCCTTCGTGGACGAGCTGGCGGTGCTGATGGAGTTTGCCTTCG ACTATGTGCAGCGGGACGGAGAGGGCGCCGGCGACGAGCGCAACTGGCTGCGCGACGAGACCGGCGGCTCGGTCTATTTC CGCCTCTCCACCCGCCCGCTGGAGCAGCCGAAGCGGGTGCTGAGCGAGGCGCAGAAGCGCGGCATCGTGGATGGCGCCTA CTGGCTGCGCGAGCCCGGCCCCAATTGCGAGGTGGTGGTGGCGGTGCAGGGCGCCGTGACCCCCGAGGCCATCGCGGCGG TGGCGCTCATCGCGCAGGACCGGCGCGACGTGGGCCTGCTCGCCGTCACCTCCGCCGACCGCCTGAACGCCGGCTGGACG GCGGCGGCCCGGGCCCGCGAGCGCGGCTTTGCCGGCGCCACCAGCCATGTGGAACGGCTGCTGGAGCCGCTGCCCCGCCA TTGCGGCATCGTGAGCGTGATCGACGGCCACCCGGCCACGCTGGGCTGGCTGGGCGCGGTGGCGGGCCATCGCCTTCGTG CGCTGGGCGTGGAGCATTTCGGCCAGACCGGGACGCTGTCGGACCTCTACGCCCACTATGGCCTCGACACCGCCGCCATC GTCGCCGCCGCGCAGGCCATCTCGCCCGGCCGGCCGCTCCGCCATCTCAAGGCGGTGTAG
Upstream 100 bases:
>100_bases GGATTTGAGCGAACCTGCCGGGCGGCTCGCGCTAGACTTCCCGGCAGCGGCGCGCCGGGCCCGAAGCGCGCCCCAAAAAA CGCCCTTCGAGGAACGCCCC
Downstream 100 bases:
>100_bases GGCAGGCCGGTGAGCATGTGCCCCGCGTTCGAGCATTTCGGATGAGGGGCACCGGCATATGAGCAAAATGCCCGGCCTCG ATGACCAGAGCGGCCTGCGC
Product: pyruvate dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 819; Mature: 819
Protein sequence:
>819_residues MDRHTSHPPTPSALSTPLRPRPAPPSAGDLAILAELERKVLWLASWMIHNANHLRPGTDGLKVGGHQASSASLAAIMSAL YFHVLRPEDRVAVKPHASPIFHAIQYLFGRQTRERLENFRGFKGAQSYPSRTKDADDVDFSTGSVGLGVAQTLFASLAQD YVHAHGLAGDRPKGRMIALVGDAELDEGNVFEALLEGWKHEVRNTWWIIDYNRQSLDGVVREGLYERFTGIFEAMGWQVV VLKYGTLQQAAFAEPGGAALKSWIDTCPNAEYSALTFQGGAAWRKRLMDDLGDQGEVSALIARRSDAELSALMTNLGGHD IAALIAAFDAIDHDRPVAFLCYTVKGFGLPLAGHKDNHAGLMTPAQMEALRAAMGVGEGREWEPFEGLKRPAGELAAFLA RVPFAQGGPRRFTDPALAVPALAPPPNPVISTQAGFGLILQDLAKGESQLSDRIVTTSPDVTVSTNLGPWVNRRGLFAHA ALADVFKRERIPSTFAWEFSPKGQHVELGIAEMNLFLALSAFGLSHSLFGARLVPVGTLYDPFICRGLDALNYACYQDAR FILVATPSGITLAPEGGAHQSISTPLIGMAQDGLAAFEPAFVDELAVLMEFAFDYVQRDGEGAGDERNWLRDETGGSVYF RLSTRPLEQPKRVLSEAQKRGIVDGAYWLREPGPNCEVVVAVQGAVTPEAIAAVALIAQDRRDVGLLAVTSADRLNAGWT AAARARERGFAGATSHVERLLEPLPRHCGIVSVIDGHPATLGWLGAVAGHRLRALGVEHFGQTGTLSDLYAHYGLDTAAI VAAAQAISPGRPLRHLKAV
Sequences:
>Translated_819_residues MDRHTSHPPTPSALSTPLRPRPAPPSAGDLAILAELERKVLWLASWMIHNANHLRPGTDGLKVGGHQASSASLAAIMSAL YFHVLRPEDRVAVKPHASPIFHAIQYLFGRQTRERLENFRGFKGAQSYPSRTKDADDVDFSTGSVGLGVAQTLFASLAQD YVHAHGLAGDRPKGRMIALVGDAELDEGNVFEALLEGWKHEVRNTWWIIDYNRQSLDGVVREGLYERFTGIFEAMGWQVV VLKYGTLQQAAFAEPGGAALKSWIDTCPNAEYSALTFQGGAAWRKRLMDDLGDQGEVSALIARRSDAELSALMTNLGGHD IAALIAAFDAIDHDRPVAFLCYTVKGFGLPLAGHKDNHAGLMTPAQMEALRAAMGVGEGREWEPFEGLKRPAGELAAFLA RVPFAQGGPRRFTDPALAVPALAPPPNPVISTQAGFGLILQDLAKGESQLSDRIVTTSPDVTVSTNLGPWVNRRGLFAHA ALADVFKRERIPSTFAWEFSPKGQHVELGIAEMNLFLALSAFGLSHSLFGARLVPVGTLYDPFICRGLDALNYACYQDAR FILVATPSGITLAPEGGAHQSISTPLIGMAQDGLAAFEPAFVDELAVLMEFAFDYVQRDGEGAGDERNWLRDETGGSVYF RLSTRPLEQPKRVLSEAQKRGIVDGAYWLREPGPNCEVVVAVQGAVTPEAIAAVALIAQDRRDVGLLAVTSADRLNAGWT AAARARERGFAGATSHVERLLEPLPRHCGIVSVIDGHPATLGWLGAVAGHRLRALGVEHFGQTGTLSDLYAHYGLDTAAI VAAAQAISPGRPLRHLKAV >Mature_819_residues MDRHTSHPPTPSALSTPLRPRPAPPSAGDLAILAELERKVLWLASWMIHNANHLRPGTDGLKVGGHQASSASLAAIMSAL YFHVLRPEDRVAVKPHASPIFHAIQYLFGRQTRERLENFRGFKGAQSYPSRTKDADDVDFSTGSVGLGVAQTLFASLAQD YVHAHGLAGDRPKGRMIALVGDAELDEGNVFEALLEGWKHEVRNTWWIIDYNRQSLDGVVREGLYERFTGIFEAMGWQVV VLKYGTLQQAAFAEPGGAALKSWIDTCPNAEYSALTFQGGAAWRKRLMDDLGDQGEVSALIARRSDAELSALMTNLGGHD IAALIAAFDAIDHDRPVAFLCYTVKGFGLPLAGHKDNHAGLMTPAQMEALRAAMGVGEGREWEPFEGLKRPAGELAAFLA RVPFAQGGPRRFTDPALAVPALAPPPNPVISTQAGFGLILQDLAKGESQLSDRIVTTSPDVTVSTNLGPWVNRRGLFAHA ALADVFKRERIPSTFAWEFSPKGQHVELGIAEMNLFLALSAFGLSHSLFGARLVPVGTLYDPFICRGLDALNYACYQDAR FILVATPSGITLAPEGGAHQSISTPLIGMAQDGLAAFEPAFVDELAVLMEFAFDYVQRDGEGAGDERNWLRDETGGSVYF RLSTRPLEQPKRVLSEAQKRGIVDGAYWLREPGPNCEVVVAVQGAVTPEAIAAVALIAQDRRDVGLLAVTSADRLNAGWT AAARARERGFAGATSHVERLLEPLPRHCGIVSVIDGHPATLGWLGAVAGHRLRALGVEHFGQTGTLSDLYAHYGLDTAAI VAAAQAISPGRPLRHLKAV
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=854, Percent_Identity=25.5269320843091, Blast_Score=161, Evalue=2e-40,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 88256; Mature: 88256
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRHTSHPPTPSALSTPLRPRPAPPSAGDLAILAELERKVLWLASWMIHNANHLRPGTDG CCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC LKVGGHQASSASLAAIMSALYFHVLRPEDRVAVKPHASPIFHAIQYLFGRQTRERLENFR CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCHHHHHHHHHHC GFKGAQSYPSRTKDADDVDFSTGSVGLGVAQTLFASLAQDYVHAHGLAGDRPKGRMIALV CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE GDAELDEGNVFEALLEGWKHEVRNTWWIIDYNRQSLDGVVREGLYERFTGIFEAMGWQVV ECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEE VLKYGTLQQAAFAEPGGAALKSWIDTCPNAEYSALTFQGGAAWRKRLMDDLGDQGEVSAL EEECCCHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCHHHH IARRSDAELSALMTNLGGHDIAALIAAFDAIDHDRPVAFLCYTVKGFGLPLAGHKDNHAG HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCCCCCCCC LMTPAQMEALRAAMGVGEGREWEPFEGLKRPAGELAAFLARVPFAQGGPRRFTDPALAVP CCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC ALAPPPNPVISTQAGFGLILQDLAKGESQLSDRIVTTSPDVTVSTNLGPWVNRRGLFAHA CCCCCCCCCEECCCCHHHHHHHHHCCHHHHHCCEEECCCCEEEECCCCCCCCCCCHHHHH ALADVFKRERIPSTFAWEFSPKGQHVELGIAEMNLFLALSAFGLSHSLFGARLVPVGTLY HHHHHHHHHCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHCCHHHHHCCEEEECCCHH DPFICRGLDALNYACYQDARFILVATPSGITLAPEGGAHQSISTPLIGMAQDGLAAFEPA HHHHHHCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCCCCCCEECCCCHHHCCHH FVDELAVLMEFAFDYVQRDGEGAGDERNWLRDETGGSVYFRLSTRPLEQPKRVLSEAQKR HHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHC GIVDGAYWLREPGPNCEVVVAVQGAVTPEAIAAVALIAQDRRDVGLLAVTSADRLNAGWT CCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCH AAARARERGFAGATSHVERLLEPLPRHCGIVSVIDGHPATLGWLGAVAGHRLRALGVEHF HHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC GQTGTLSDLYAHYGLDTAAIVAAAQAISPGRPLRHLKAV CCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCCC >Mature Secondary Structure MDRHTSHPPTPSALSTPLRPRPAPPSAGDLAILAELERKVLWLASWMIHNANHLRPGTDG CCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC LKVGGHQASSASLAAIMSALYFHVLRPEDRVAVKPHASPIFHAIQYLFGRQTRERLENFR CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCHHHHHHHHHHC GFKGAQSYPSRTKDADDVDFSTGSVGLGVAQTLFASLAQDYVHAHGLAGDRPKGRMIALV CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE GDAELDEGNVFEALLEGWKHEVRNTWWIIDYNRQSLDGVVREGLYERFTGIFEAMGWQVV ECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEE VLKYGTLQQAAFAEPGGAALKSWIDTCPNAEYSALTFQGGAAWRKRLMDDLGDQGEVSAL EEECCCHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCHHHH IARRSDAELSALMTNLGGHDIAALIAAFDAIDHDRPVAFLCYTVKGFGLPLAGHKDNHAG HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCCCCCCCC LMTPAQMEALRAAMGVGEGREWEPFEGLKRPAGELAAFLARVPFAQGGPRRFTDPALAVP CCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC ALAPPPNPVISTQAGFGLILQDLAKGESQLSDRIVTTSPDVTVSTNLGPWVNRRGLFAHA CCCCCCCCCEECCCCHHHHHHHHHCCHHHHHCCEEECCCCEEEECCCCCCCCCCCHHHHH ALADVFKRERIPSTFAWEFSPKGQHVELGIAEMNLFLALSAFGLSHSLFGARLVPVGTLY HHHHHHHHHCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHCCHHHHHCCEEEECCCHH DPFICRGLDALNYACYQDARFILVATPSGITLAPEGGAHQSISTPLIGMAQDGLAAFEPA HHHHHHCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCCCCCCEECCCCHHHCCHH FVDELAVLMEFAFDYVQRDGEGAGDERNWLRDETGGSVYFRLSTRPLEQPKRVLSEAQKR HHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHC GIVDGAYWLREPGPNCEVVVAVQGAVTPEAIAAVALIAQDRRDVGLLAVTSADRLNAGWT CCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCH AAARARERGFAGATSHVERLLEPLPRHCGIVSVIDGHPATLGWLGAVAGHRLRALGVEHF HHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC GQTGTLSDLYAHYGLDTAAIVAAAQAISPGRPLRHLKAV CCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021225 [H]