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The map label for this gene is nifU [H]

Identifier: 154244065

GI number: 154244065

Start: 112733

End: 113098

Strand: Direct

Name: nifU [H]

Synonym: Xaut_0107

Alternate gene names: 154244065

Gene position: 112733-113098 (Clockwise)

Preceding gene: 154244064

Following gene: 154244066

Centisome position: 2.12

GC content: 66.67

Gene sequence:

>366_bases
ATGTTGGCCGAGACCGAAGAGTGCGCGCCGCTCACCCAGCAAGCCAAGCGTGAGGCGATCATCCGCGAGGTGATCGAAGA
GATCCGTCCCAATCTCAAGCGGGATGGCGGCGACTGCGAGCTCGTCGAAATCGACGGCAACAAGGTCATGGTGAAGATGA
CCGGCGCTTGCGTCTTCTGCAAGCTGGCGAGCGAGACCATCGAGGGCATCCAGACCAAAATCGTGGAGCGCCTGGGCGAG
CTGATCCGGCTCATCCCGGTGGCCGGCGCGCAGAACAAGCCGCTGGTGAGCCTGAAGAGCATCGCGCCGGCTCCGACCGC
CGCGCCGGTGGCTCCGGCCCCCGCCGTCCCCTCGCCGACGCGCTGA

Upstream 100 bases:

>100_bases
CCTCGAGCTGCTCCTGCGGCAAGTCCTTCGGCTGAAGTCCTTCAGCCGAAGCTGGAACTGACCGTACGGGTTGAACTCAA
TTCAGATAGAGGACGCAGCG

Downstream 100 bases:

>100_bases
GGGACGAGCCAAGGTCTAGACGATCGAAGGGGTGATGCCGTGCGGCCCGTCTATCTCGACAACAACGCGACGACACGGAC
CGACCCCGCTGTGGTCGAGG

Product: NifU domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MLAETEECAPLTQQAKREAIIREVIEEIRPNLKRDGGDCELVEIDGNKVMVKMTGACVFCKLASETIEGIQTKIVERLGE
LIRLIPVAGAQNKPLVSLKSIAPAPTAAPVAPAPAVPSPTR

Sequences:

>Translated_121_residues
MLAETEECAPLTQQAKREAIIREVIEEIRPNLKRDGGDCELVEIDGNKVMVKMTGACVFCKLASETIEGIQTKIVERLGE
LIRLIPVAGAQNKPLVSLKSIAPAPTAAPVAPAPAVPSPTR
>Mature_121_residues
MLAETEECAPLTQQAKREAIIREVIEEIRPNLKRDGGDCELVEIDGNKVMVKMTGACVFCKLASETIEGIQTKIVERLGE
LIRLIPVAGAQNKPLVSLKSIAPAPTAAPVAPAPAVPSPTR

Specific function: Involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins [H]

COG id: COG0694

COG function: function code O; Thioredoxin-like proteins and domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007419
- InterPro:   IPR016217
- InterPro:   IPR010238
- InterPro:   IPR001075
- InterPro:   IPR002871
- ProDom:   PD002830 [H]

Pfam domain/function: PF04324 Fer2_BFD; PF01106 NifU; PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 12926; Mature: 12926

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAETEECAPLTQQAKREAIIREVIEEIRPNLKRDGGDCELVEIDGNKVMVKMTGACVFC
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCHHH
KLASETIEGIQTKIVERLGELIRLIPVAGAQNKPLVSLKSIAPAPTAAPVAPAPAVPSPT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
R
C
>Mature Secondary Structure
MLAETEECAPLTQQAKREAIIREVIEEIRPNLKRDGGDCELVEIDGNKVMVKMTGACVFC
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCHHH
KLASETIEGIQTKIVERLGELIRLIPVAGAQNKPLVSLKSIAPAPTAAPVAPAPAVPSPT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2644218; 3040672; 7947754; 10819462 [H]