Click here to switch to the map view.

The map label for this gene is yjjU [H]

Identifier: 153950905

GI number: 153950905

Start: 3951535

End: 3952803

Strand: Reverse

Name: yjjU [H]

Synonym: YpsIP31758_3501

Alternate gene names: 153950905

Gene position: 3952803-3951535 (Counterclockwise)

Preceding gene: 153948281

Following gene: 153949108

Centisome position: 83.69

GC content: 49.01

Gene sequence:

>1269_bases
GTGGGATACAGAATACCTATTACGCTCGGTAATATTGAGCCACTCGCCTATAAACCCTATCAGCCCGGTAAAATGGCGCT
GGTCTGTGAGGGGGGCGGGCAACGGGGGATTTTTACAGCCGGTGTGCTGGATGAATTCCATCGTGCTCGCTTTAACCCTT
TTGATCTCATGATTGGTACCTCAGCAGGGGCGCAAAATTTATCTGCCTTTATTTGCGGGCAACCCGGTTACGCACGGCGA
GTTATTACCCGTTACACCACCACAGCCAATTTTTTTAACCCATTACGCTTTGTACGTGGGGGTAATTTAATTGATCTCGA
TTGGCTAGTGGATATCACTTCCCAACAGTACCCTCTGGCATTCGATCACGCTGAACAATATTTGCGTCAGGGGCGCGAGT
TTTTAATGTGTGCTTGTCGCAGTGATGATTTCGAACCAACGTATATTTCCCCAACTAGAGAAAACTGGCTAACAGCGATT
AAAGCCTCTAGCGCCATCCCCGGTTTATATCGGCAGGGCGTTGAGTTGGATGGGGTGAGTTATCTGGATGGGGGGATCAG
CGATGCGATCCCGGTAGAAGAGGCTTATCGCCGTGGCGCAGAGACGATAGTGGTGATCCGCACGGTGCCTTCGCAGGCTC
ACTATACGCCGCAATGGTTTAAGCGGATTGAACAATGGCTGAGTGAAAGCAGCTTGCAGCAATTGGTGCGGATTATGCAG
CAGCATGAGCGGAGTTATCATCGTATTCAGCAATTTATCGAGAAACCGCCGGGCGATGTACGAATTTTCGAAATTTTCCC
ATCAAAACCACTCGCCAGTAAGGCATTGGGGAGCGGGGCGGTGGCTCTGAATCGTGACTATCATTTAGGCCGCCGCTGTG
GCCGCTATTTTCTGGCAACCATTGGGCGTTGGTTATTACCTCGTGAGTCGTTGGGGGATAGCGATAAAACCTCCATTTCC
CTTTCACGCCGCATTATTCAACCACAAAATATTATCCAAACACCGAACGTTTTCCAAACAAAGAACATTAATCAGCTGAA
TAATACCTATGATTACAGTGGGTCTAAAGAACGCTTTACCGCGGTATTCTCCACAGAACCGTCTGTCACGTTATCTGATC
TCACCGCGCCTTCCGAGGTGCAGGCAACGGCAGCACAAATAAATGAGCCCCTTGATCCTACCTCACTGACTGTCGTTGAT
ACTGAACAAGCGGAGGCTAACTCTTTACCCGTCGATATCACTTTGCCACCGAATCTGACAAAAAAATAA

Upstream 100 bases:

>100_bases
TTTACGGGACGTAAGCGCCTTTAACAAGGCAGTAGGGGTGACAGCAAAGGACAATAAGGGGTATCGTCAACACCTGTTCG
TCATGAATTAAGGATAGATG

Downstream 100 bases:

>100_bases
AGGTAATACTGTGTGATGAGAACGCCAGATAAGCCGATGCCGTATTTTATCGATACCCACTGTCATTTTGACTTCCCTCC
GTTCACCGGTGATGAAGCCG

Product: patatin family phospholipase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MGYRIPITLGNIEPLAYKPYQPGKMALVCEGGGQRGIFTAGVLDEFHRARFNPFDLMIGTSAGAQNLSAFICGQPGYARR
VITRYTTTANFFNPLRFVRGGNLIDLDWLVDITSQQYPLAFDHAEQYLRQGREFLMCACRSDDFEPTYISPTRENWLTAI
KASSAIPGLYRQGVELDGVSYLDGGISDAIPVEEAYRRGAETIVVIRTVPSQAHYTPQWFKRIEQWLSESSLQQLVRIMQ
QHERSYHRIQQFIEKPPGDVRIFEIFPSKPLASKALGSGAVALNRDYHLGRRCGRYFLATIGRWLLPRESLGDSDKTSIS
LSRRIIQPQNIIQTPNVFQTKNINQLNNTYDYSGSKERFTAVFSTEPSVTLSDLTAPSEVQATAAQINEPLDPTSLTVVD
TEQAEANSLPVDITLPPNLTKK

Sequences:

>Translated_422_residues
MGYRIPITLGNIEPLAYKPYQPGKMALVCEGGGQRGIFTAGVLDEFHRARFNPFDLMIGTSAGAQNLSAFICGQPGYARR
VITRYTTTANFFNPLRFVRGGNLIDLDWLVDITSQQYPLAFDHAEQYLRQGREFLMCACRSDDFEPTYISPTRENWLTAI
KASSAIPGLYRQGVELDGVSYLDGGISDAIPVEEAYRRGAETIVVIRTVPSQAHYTPQWFKRIEQWLSESSLQQLVRIMQ
QHERSYHRIQQFIEKPPGDVRIFEIFPSKPLASKALGSGAVALNRDYHLGRRCGRYFLATIGRWLLPRESLGDSDKTSIS
LSRRIIQPQNIIQTPNVFQTKNINQLNNTYDYSGSKERFTAVFSTEPSVTLSDLTAPSEVQATAAQINEPLDPTSLTVVD
TEQAEANSLPVDITLPPNLTKK
>Mature_421_residues
GYRIPITLGNIEPLAYKPYQPGKMALVCEGGGQRGIFTAGVLDEFHRARFNPFDLMIGTSAGAQNLSAFICGQPGYARRV
ITRYTTTANFFNPLRFVRGGNLIDLDWLVDITSQQYPLAFDHAEQYLRQGREFLMCACRSDDFEPTYISPTRENWLTAIK
ASSAIPGLYRQGVELDGVSYLDGGISDAIPVEEAYRRGAETIVVIRTVPSQAHYTPQWFKRIEQWLSESSLQQLVRIMQQ
HERSYHRIQQFIEKPPGDVRIFEIFPSKPLASKALGSGAVALNRDYHLGRRCGRYFLATIGRWLLPRESLGDSDKTSISL
SRRIIQPQNIIQTPNVFQTKNINQLNNTYDYSGSKERFTAVFSTEPSVTLSDLTAPSEVQATAAQINEPLDPTSLTVVDT
EQAEANSLPVDITLPPNLTKK

Specific function: Probable lipid hydrolase [H]

COG id: COG4667

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Escherichia coli, GI1790837, Length=348, Percent_Identity=63.7931034482759, Blast_Score=468, Evalue=1e-133,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 47335; Mature: 47204

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYRIPITLGNIEPLAYKPYQPGKMALVCEGGGQRGIFTAGVLDEFHRARFNPFDLMIGT
CCEEEEEEECCCCCCEECCCCCCCEEEEECCCCCCCEEEHHHHHHHHHCCCCCEEEEEEC
SAGAQNLSAFICGQPGYARRVITRYTTTANFFNPLRFVRGGNLIDLDWLVDITSQQYPLA
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHEEEEECCCCCCEE
FDHAEQYLRQGREFLMCACRSDDFEPTYISPTRENWLTAIKASSAIPGLYRQGVELDGVS
HHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCH
YLDGGISDAIPVEEAYRRGAETIVVIRTVPSQAHYTPQWFKRIEQWLSESSLQQLVRIMQ
HCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QHERSYHRIQQFIEKPPGDVRIFEIFPSKPLASKALGSGAVALNRDYHLGRRCGRYFLAT
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHH
IGRWLLPRESLGDSDKTSISLSRRIIQPQNIIQTPNVFQTKNINQLNNTYDYSGSKERFT
HHHHHCCHHHCCCCCCHHHHHHHHHCCCHHHCCCCCCEECCCCHHCCCCCCCCCCCCEEE
AVFSTEPSVTLSDLTAPSEVQATAAQINEPLDPTSLTVVDTEQAEANSLPVDITLPPNLT
EEEECCCCEEHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCC
KK
CC
>Mature Secondary Structure 
GYRIPITLGNIEPLAYKPYQPGKMALVCEGGGQRGIFTAGVLDEFHRARFNPFDLMIGT
CEEEEEEECCCCCCEECCCCCCCEEEEECCCCCCCEEEHHHHHHHHHCCCCCEEEEEEC
SAGAQNLSAFICGQPGYARRVITRYTTTANFFNPLRFVRGGNLIDLDWLVDITSQQYPLA
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHEEEEECCCCCCEE
FDHAEQYLRQGREFLMCACRSDDFEPTYISPTRENWLTAIKASSAIPGLYRQGVELDGVS
HHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCH
YLDGGISDAIPVEEAYRRGAETIVVIRTVPSQAHYTPQWFKRIEQWLSESSLQQLVRIMQ
HCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QHERSYHRIQQFIEKPPGDVRIFEIFPSKPLASKALGSGAVALNRDYHLGRRCGRYFLAT
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHH
IGRWLLPRESLGDSDKTSISLSRRIIQPQNIIQTPNVFQTKNINQLNNTYDYSGSKERFT
HHHHHCCHHHCCCCCCHHHHHHHHHCCCHHHCCCCCCEECCCCHHCCCCCCCCCCCCEEE
AVFSTEPSVTLSDLTAPSEVQATAAQINEPLDPTSLTVVDTEQAEANSLPVDITLPPNLT
EEEECCCCEEHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCC
KK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]