| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153950794
Identifier: 153950794
GI number: 153950794
Start: 4262193
End: 4263611
Strand: Reverse
Name: 153950794
Synonym: YpsIP31758_3779
Alternate gene names: NA
Gene position: 4263611-4262193 (Counterclockwise)
Preceding gene: 153950194
Following gene: 153950732
Centisome position: 90.27
GC content: 52.5
Gene sequence:
>1419_bases ATGTCGAGAAATAAGTTTTGTCAGTGCTTGATAACTTTGGAGCGGCCTCTGATCCCCAGGTGCTATCCGCCTAACGACTT GATTATCATGGAGGATAATATGATGCATACAGAAAACAATTCCCCCCCAGGTTTGATCCCGTTGCCCGATTGGTATCCGG TTGCTTTTTCGCATCTGGATGCGATGGAGTACGCGAGTGTGACGCGGCTTTGGCACCATGAACCCGTGCTGCGTGATCTG GTAGACGAGCTGGATAAACGTAATCCGGGGCTGATTACGTTTACGCATTGCCCACATTGTCACAGTGCCGATATTTGCCC CGGCACCCGCCCGGAAGAGTACCGCTGTCGAACCTGCCATCGGTGCAGTTCTCCGTATACGCATACCCCGTTTTTCGATT TACACCATGCCCGACATTCACGGCTCTATGCGGTACTGGTGACCCTCTGGGGAACCTGGCAAGTGGAGGACGCTGCCTGG TTAAGTGACTGCAAATCCAAACAGATATGGAAGCAGTACTGCCATCGGCTAAAACCCATTCTGGCGTTGATCGGCGGCCG TGCGGTAACCCATACACCTCGCTACTTACGGGGTTTTACACCGGGGCAGCAGGGGTTGCACTGCCCAGCCTGCGCCTCCA CGCAATTGGTCTACAGCGAAACCATGCCAGTAGGTAATCCCGAGGTACACTGTCAGGTTTGCCAGACTGATTTTGTGATG TATCCCGACATTCCAAAAGGCATCGACCCGTTTGCAGTCAATACGCCACAGTATGACATCCCGCTTCCCCGCTGGTTCAG CCGCTTGTTTTCTCATGCGAGCCAGGCACAGTACCAACATTTACGGGAGGTCTGGCAACGGGAACCGGTACTGAGAGAGG CTGTGGATCGGCTGGATGCACAAAATCCTGAACAGGGTGCGGTGTATGCCTGCCCTTACTGCCAGAATAAGCACATCAGC CCACGTAAAACAGCCTCATCTATTGAGGGGTATTATTGCCCCGCCTGTGATAATCCATTTACGGCCACTACCGGGACGGT ATTTACCCGGATGCGTCAGGAGCATTTTTGGCGTTTGTATGCGGTATTGGTGATGCTATGGACACAGTGGCGACCAACAC AGATTTTTGAGCTATGTCAGTTACGTTCAGTGCACCCCTTTCTGACTTACCATAAACGGCTCGCTCCGCTACTGGCTGAG TTTGATGGTGCCCCGATCACGCCATATCCCCGTAATTTACTGGGGTTCACCCCCGGGCAGCAGGGGGTTTGCTGCGTGTA TTGCCAATCGACAAAGCTGATAACGGAAGGGATAACGGTCATGCCACTGGATAACCCCTATATCTGTTGTCTGGACTGTG GACAGCGATTTATGCTGCGGGTCTGGCGAAAACAGGTAAAAAGTAACGAGAAAAAATAA
Upstream 100 bases:
>100_bases GACATAAGGATGCTGTCATGCCGCAACATCAAGATGTCTTCGTTATATGAAATATTAATGTAAAAATTTAGCGGTGGGCT GGCGCTATATCAGGCCGGTG
Downstream 100 bases:
>100_bases ATCCCAAAGAGATGGCTTGCTATTTTAAAAATGAATTTATTATTATTGATAAAATAACAAGCCAGCAAGGGATTGAAAAG TATGTTATTTGATTGTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 472; Mature: 471
Protein sequence:
>472_residues MSRNKFCQCLITLERPLIPRCYPPNDLIIMEDNMMHTENNSPPGLIPLPDWYPVAFSHLDAMEYASVTRLWHHEPVLRDL VDELDKRNPGLITFTHCPHCHSADICPGTRPEEYRCRTCHRCSSPYTHTPFFDLHHARHSRLYAVLVTLWGTWQVEDAAW LSDCKSKQIWKQYCHRLKPILALIGGRAVTHTPRYLRGFTPGQQGLHCPACASTQLVYSETMPVGNPEVHCQVCQTDFVM YPDIPKGIDPFAVNTPQYDIPLPRWFSRLFSHASQAQYQHLREVWQREPVLREAVDRLDAQNPEQGAVYACPYCQNKHIS PRKTASSIEGYYCPACDNPFTATTGTVFTRMRQEHFWRLYAVLVMLWTQWRPTQIFELCQLRSVHPFLTYHKRLAPLLAE FDGAPITPYPRNLLGFTPGQQGVCCVYCQSTKLITEGITVMPLDNPYICCLDCGQRFMLRVWRKQVKSNEKK
Sequences:
>Translated_472_residues MSRNKFCQCLITLERPLIPRCYPPNDLIIMEDNMMHTENNSPPGLIPLPDWYPVAFSHLDAMEYASVTRLWHHEPVLRDL VDELDKRNPGLITFTHCPHCHSADICPGTRPEEYRCRTCHRCSSPYTHTPFFDLHHARHSRLYAVLVTLWGTWQVEDAAW LSDCKSKQIWKQYCHRLKPILALIGGRAVTHTPRYLRGFTPGQQGLHCPACASTQLVYSETMPVGNPEVHCQVCQTDFVM YPDIPKGIDPFAVNTPQYDIPLPRWFSRLFSHASQAQYQHLREVWQREPVLREAVDRLDAQNPEQGAVYACPYCQNKHIS PRKTASSIEGYYCPACDNPFTATTGTVFTRMRQEHFWRLYAVLVMLWTQWRPTQIFELCQLRSVHPFLTYHKRLAPLLAE FDGAPITPYPRNLLGFTPGQQGVCCVYCQSTKLITEGITVMPLDNPYICCLDCGQRFMLRVWRKQVKSNEKK >Mature_471_residues SRNKFCQCLITLERPLIPRCYPPNDLIIMEDNMMHTENNSPPGLIPLPDWYPVAFSHLDAMEYASVTRLWHHEPVLRDLV DELDKRNPGLITFTHCPHCHSADICPGTRPEEYRCRTCHRCSSPYTHTPFFDLHHARHSRLYAVLVTLWGTWQVEDAAWL SDCKSKQIWKQYCHRLKPILALIGGRAVTHTPRYLRGFTPGQQGLHCPACASTQLVYSETMPVGNPEVHCQVCQTDFVMY PDIPKGIDPFAVNTPQYDIPLPRWFSRLFSHASQAQYQHLREVWQREPVLREAVDRLDAQNPEQGAVYACPYCQNKHISP RKTASSIEGYYCPACDNPFTATTGTVFTRMRQEHFWRLYAVLVMLWTQWRPTQIFELCQLRSVHPFLTYHKRLAPLLAEF DGAPITPYPRNLLGFTPGQQGVCCVYCQSTKLITEGITVMPLDNPYICCLDCGQRFMLRVWRKQVKSNEKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54639; Mature: 54508
Theoretical pI: Translated: 8.00; Mature: 8.00
Prosite motif: PS00028 ZINC_FINGER_C2H2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 7.8 %Cys+Met (Translated Protein) 5.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 7.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRNKFCQCLITLERPLIPRCYPPNDLIIMEDNMMHTENNSPPGLIPLPDWYPVAFSHLD CCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEECCCCCCCCEEECCCCHHHHHHHHH AMEYASVTRLWHHEPVLRDLVDELDKRNPGLITFTHCPHCHSADICPGTRPEEYRCRTCH HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH RCSSPYTHTPFFDLHHARHSRLYAVLVTLWGTWQVEDAAWLSDCKSKQIWKQYCHRLKPI HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHHHH LALIGGRAVTHTPRYLRGFTPGQQGLHCPACASTQLVYSETMPVGNPEVHCQVCQTDFVM HHHHCCCHHCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCEEE YPDIPKGIDPFAVNTPQYDIPLPRWFSRLFSHASQAQYQHLREVWQREPVLREAVDRLDA CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC QNPEQGAVYACPYCQNKHISPRKTASSIEGYYCPACDNPFTATTGTVFTRMRQEHFWRLY CCCCCCCEEECCCCCCCCCCCHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHH AVLVMLWTQWRPTQIFELCQLRSVHPFLTYHKRLAPLLAEFDGAPITPYPRNLLGFTPGQ HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCC QGVCCVYCQSTKLITEGITVMPLDNPYICCLDCGQRFMLRVWRKQVKSNEKK CCEEEEEECCCEEHHCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SRNKFCQCLITLERPLIPRCYPPNDLIIMEDNMMHTENNSPPGLIPLPDWYPVAFSHLD CCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEECCCCCCCCEEECCCCHHHHHHHHH AMEYASVTRLWHHEPVLRDLVDELDKRNPGLITFTHCPHCHSADICPGTRPEEYRCRTCH HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH RCSSPYTHTPFFDLHHARHSRLYAVLVTLWGTWQVEDAAWLSDCKSKQIWKQYCHRLKPI HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHHHH LALIGGRAVTHTPRYLRGFTPGQQGLHCPACASTQLVYSETMPVGNPEVHCQVCQTDFVM HHHHCCCHHCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCEEE YPDIPKGIDPFAVNTPQYDIPLPRWFSRLFSHASQAQYQHLREVWQREPVLREAVDRLDA CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC QNPEQGAVYACPYCQNKHISPRKTASSIEGYYCPACDNPFTATTGTVFTRMRQEHFWRLY CCCCCCCEEECCCCCCCCCCCHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHH AVLVMLWTQWRPTQIFELCQLRSVHPFLTYHKRLAPLLAEFDGAPITPYPRNLLGFTPGQ HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCC QGVCCVYCQSTKLITEGITVMPLDNPYICCLDCGQRFMLRVWRKQVKSNEKK CCEEEEEECCCEEHHCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA