Click here to switch to the map view.

The map label for this gene is rstR1 [H]

Identifier: 153950714

GI number: 153950714

Start: 396810

End: 397217

Strand: Reverse

Name: rstR1 [H]

Synonym: YpsIP31758_0337

Alternate gene names: 153950714

Gene position: 397217-396810 (Counterclockwise)

Preceding gene: 153950086

Following gene: 153950391

Centisome position: 8.41

GC content: 45.1

Gene sequence:

>408_bases
ATGACTGACGTGATAGACGAGATGATGCAGACGGAAGAACAGCGCCGGGCATTTGGCCTACGGCTAAAAGAATTACGTAA
ACAACAACATAAAACACAAAAGGAAGTCGCGACCCGTATTGGCTTGCAACTTTCACAGTACAATAAATATGAATCAGGGA
TGCATATTCCACCGGCGGATAAATTAATTACGCTGGCTGAGTTACTGGTTACCAGCATTGATTATCTGCTACTTGGCTCG
TCTAACGAGACCTCATCGATTAGGAATACGCGCTTATTAGAGCGTTTTAAAGCCTTGTCGCAGTGCCAACCGGAAGAGCA
GGAAACCGTGATTAAGTTAATTGATGCGGTGATTGTGAAGCATCGGGTTGAATCGGCTTTACAGCCAGTTGACCCAGAGA
AGAAGTGA

Upstream 100 bases:

>100_bases
AAATACGTTAACATTTAATTTGCATCGTATTACGATATCTAATAGTATCGCTATACGATGTGTATTCGTTTTTAAAAGTG
GCCTTATACTGGAGCATCTT

Downstream 100 bases:

>100_bases
TAACCACAGTATTTTAACACAGGGTTGAGGTGTATCAGCACCTCAGCCCCGCTAACCACAAGCAACTAAGCAGGAGTTAC
TATGGCTAAGGCACATTCTA

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MTDVIDEMMQTEEQRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSIDYLLLGS
SNETSSIRNTRLLERFKALSQCQPEEQETVIKLIDAVIVKHRVESALQPVDPEKK

Sequences:

>Translated_135_residues
MTDVIDEMMQTEEQRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSIDYLLLGS
SNETSSIRNTRLLERFKALSQCQPEEQETVIKLIDAVIVKHRVESALQPVDPEKK
>Mature_134_residues
TDVIDEMMQTEEQRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSIDYLLLGSS
NETSSIRNTRLLERFKALSQCQPEEQETVIKLIDAVIVKHRVESALQPVDPEKK

Specific function: Transcriptional repressor of the integrated CTXPhi phage gene rstA2 [H]

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 15547; Mature: 15416

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVIDEMMQTEEQRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPAD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
KLITLAELLVTSIDYLLLGSSNETSSIRNTRLLERFKALSQCQPEEQETVIKLIDAVIVK
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
HRVESALQPVDPEKK
HHHHHHHCCCCCCCC
>Mature Secondary Structure 
TDVIDEMMQTEEQRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
KLITLAELLVTSIDYLLLGSSNETSSIRNTRLLERFKALSQCQPEEQETVIKLIDAVIVK
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
HRVESALQPVDPEKK
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9220000; 10952301 [H]