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The map label for this gene is rbsC [H]

Identifier: 153950670

GI number: 153950670

Start: 3676706

End: 3677695

Strand: Direct

Name: rbsC [H]

Synonym: YpsIP31758_3267

Alternate gene names: 153950670

Gene position: 3676706-3677695 (Clockwise)

Preceding gene: 153947534

Following gene: 153948518

Centisome position: 77.84

GC content: 53.74

Gene sequence:

>990_bases
ATGGCTAATTTCGGCAGACTCAAACCGCAATCCGTCGAAGGGTGGCTGGCTTGGGTCATCGTTCTTATGTTGGCCCTGTT
CTCTCTGCTCAGCCGCGAGTTTCTCTCAATACAAAACGTGCTGGACCTGGCCGAAAGCTACGCGGTGACCGGTATTTTTG
CCCTCGGCCTGTTTGTGGTGCTGGTCACCGGGGGGATTGATATCTCCTTTGCAGCCGTGGCCTCCGTGGTGCAATACGTG
GTCGCCTCCTTGTTGCTTAATGATGTGATTGCCAGCCCGGTGCTCTGTCTGGTCATTGCGGTAGCTATCGGCGTGTTGCT
CGGGTTCGTTAATGCCGTGCTGATTTACTACCTGAATATTGTTTCGATCATTATCACCATCAGTATGCAGTCCTTGCTGT
TCGGTATGCTGATGTGGCTGACCAACGGCCACAGTATTTATGACTTACCCAACTGGTGGGTCGATCAGCGCTCTATTTTG
CCCTTCACCGTTAACGGCGAGAGTTACCAGATTGGCTTGCCGCTGGTCATCATGTTAGCCATCGCGCTGTTGACCTGGAT
TTTGCTGAATAAAACGCATATTGGCCGTCAGCTCTATACCGTGGGAGGCAGCCCAGAATCCGCTCGCCGTATCGGGATCC
GTGTCTCTCTGATTTATCTGTTTGCCTATGGCTATTTGGGGGCGGCGGCAGCCATCGGCGGCATGTTACAGACCTACCGC
ATGAGCGAAGTGGTACCTAGCGCGCTGGTCGGTGGTGAGTTGGATGTGCTGGCCGCAGCAGTATTAGGGGGAGCCAGCTT
ATCCGGCGGGCGAGGGTCCGTGATTGGTACGCTGATGGGGGTGTTCCTGATTGGCATCCTGAAAAATGGCCTCAACCTGA
TCGGTGTCTCCAGCTACTTCGTCAACATCGTGATTGGCATGGTGATCGTCGCCGCCATTTGCGTAACCCACTACAAAAAA
CGCAAAGAAACTGATGTTGGCTTTGTCTGA

Upstream 100 bases:

>100_bases
TATTACAACTGCGATCGCATCCTGCATATGCAGCAGGGGCGTATCGTCAATGAACTGATCCCGAATCAAATGACTGAACA
ACAGCTGGCGGAGGTCATCA

Downstream 100 bases:

>100_bases
CAGGGGTGTTTTATGAAAAAGAACCGTTTTCTACCTATCGACGGCACCATTTCCGGCTTGTTAGGGATTTTTTGTCTGGC
AACACTGGCCTTCAGTCTGG

Product: carbohydrate ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MANFGRLKPQSVEGWLAWVIVLMLALFSLLSREFLSIQNVLDLAESYAVTGIFALGLFVVLVTGGIDISFAAVASVVQYV
VASLLLNDVIASPVLCLVIAVAIGVLLGFVNAVLIYYLNIVSIIITISMQSLLFGMLMWLTNGHSIYDLPNWWVDQRSIL
PFTVNGESYQIGLPLVIMLAIALLTWILLNKTHIGRQLYTVGGSPESARRIGIRVSLIYLFAYGYLGAAAAIGGMLQTYR
MSEVVPSALVGGELDVLAAAVLGGASLSGGRGSVIGTLMGVFLIGILKNGLNLIGVSSYFVNIVIGMVIVAAICVTHYKK
RKETDVGFV

Sequences:

>Translated_329_residues
MANFGRLKPQSVEGWLAWVIVLMLALFSLLSREFLSIQNVLDLAESYAVTGIFALGLFVVLVTGGIDISFAAVASVVQYV
VASLLLNDVIASPVLCLVIAVAIGVLLGFVNAVLIYYLNIVSIIITISMQSLLFGMLMWLTNGHSIYDLPNWWVDQRSIL
PFTVNGESYQIGLPLVIMLAIALLTWILLNKTHIGRQLYTVGGSPESARRIGIRVSLIYLFAYGYLGAAAAIGGMLQTYR
MSEVVPSALVGGELDVLAAAVLGGASLSGGRGSVIGTLMGVFLIGILKNGLNLIGVSSYFVNIVIGMVIVAAICVTHYKK
RKETDVGFV
>Mature_328_residues
ANFGRLKPQSVEGWLAWVIVLMLALFSLLSREFLSIQNVLDLAESYAVTGIFALGLFVVLVTGGIDISFAAVASVVQYVV
ASLLLNDVIASPVLCLVIAVAIGVLLGFVNAVLIYYLNIVSIIITISMQSLLFGMLMWLTNGHSIYDLPNWWVDQRSILP
FTVNGESYQIGLPLVIMLAIALLTWILLNKTHIGRQLYTVGGSPESARRIGIRVSLIYLFAYGYLGAAAAIGGMLQTYRM
SEVVPSALVGGELDVLAAAVLGGASLSGGRGSVIGTLMGVFLIGILKNGLNLIGVSSYFVNIVIGMVIVAAICVTHYKKR
KETDVGFV

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=33.5548172757475, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1788896, Length=307, Percent_Identity=30.2931596091205, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790524, Length=306, Percent_Identity=28.4313725490196, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI145693152, Length=326, Percent_Identity=28.8343558282209, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082395, Length=304, Percent_Identity=28.6184210526316, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787793, Length=317, Percent_Identity=27.4447949526814, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=36.7647058823529, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787794, Length=323, Percent_Identity=27.8637770897833, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788471, Length=333, Percent_Identity=29.7297297297297, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35192; Mature: 35060

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANFGRLKPQSVEGWLAWVIVLMLALFSLLSREFLSIQNVLDLAESYAVTGIFALGLFVV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVTGGIDISFAAVASVVQYVVASLLLNDVIASPVLCLVIAVAIGVLLGFVNAVLIYYLNI
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSIIITISMQSLLFGMLMWLTNGHSIYDLPNWWVDQRSILPFTVNGESYQIGLPLVIMLA
HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCEEECHHHHHHHH
IALLTWILLNKTHIGRQLYTVGGSPESARRIGIRVSLIYLFAYGYLGAAAAIGGMLQTYR
HHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSEVVPSALVGGELDVLAAAVLGGASLSGGRGSVIGTLMGVFLIGILKNGLNLIGVSSYF
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VNIVIGMVIVAAICVTHYKKRKETDVGFV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ANFGRLKPQSVEGWLAWVIVLMLALFSLLSREFLSIQNVLDLAESYAVTGIFALGLFVV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVTGGIDISFAAVASVVQYVVASLLLNDVIASPVLCLVIAVAIGVLLGFVNAVLIYYLNI
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSIIITISMQSLLFGMLMWLTNGHSIYDLPNWWVDQRSILPFTVNGESYQIGLPLVIMLA
HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCEEECHHHHHHHH
IALLTWILLNKTHIGRQLYTVGGSPESARRIGIRVSLIYLFAYGYLGAAAAIGGMLQTYR
HHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSEVVPSALVGGELDVLAAAVLGGASLSGGRGSVIGTLMGVFLIGILKNGLNLIGVSSYF
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VNIVIGMVIVAAICVTHYKKRKETDVGFV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]