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The map label for this gene is intB [H]

Identifier: 153950646

GI number: 153950646

Start: 3999144

End: 4000379

Strand: Reverse

Name: intB [H]

Synonym: YpsIP31758_3540

Alternate gene names: 153950646

Gene position: 4000379-3999144 (Counterclockwise)

Preceding gene: 153949000

Following gene: 153949909

Centisome position: 84.69

GC content: 49.27

Gene sequence:

>1236_bases
ATGGCTTTGAGTGATGTGAAGGTTCGTTCGGCCAAGCCTGAAGAAAAAGCCTATAAGCTTACCGATGGTGACGGTATGGT
GTTACTGGTTCATCCTAACGGCTCAAAGTACTGGCGGCTGCGATATCGCTTTGGCGGCAAAGAAAAGATGTTGGCGCTGG
GAATATATCCTGAAATATCGTTGGCAGATGCCAGAGCACGGCGTGACGAAGCTCGTAAGCAGTTAGCTAACGGTGTGGAC
CCAAGTGAGAGCAAGAAAGCCGTTAAGGTAGAGCAGGAGCAAGAAGCGATAACTTTTGAAGTGGTAGCCAGAGAGTGGCA
TGCCAGTAATCGTCAATGGTCAGAAGCTCACAGTGCTCGAGTGCTCAAAAGCTTAGAGGACAATCTCTTTCAATCCATAG
GCAAACGGAATATCACAGACCTCGGAACCCGTGATCTTTTACCTCCCATTAAGGCCGTAGAGATGTCTGGGCGTCTTGAG
GTGGCTTCCCGCCTGCAACAACGAACCACAGCGATAATGCGCTATGCCGTTCAAAGCGGTTTAATTGATTACAACCCCGC
GCAGGAGATGGCGGGCGCTGTTGCTACCGGTAAAAGAAAGCACCGTGCTGCACTTGAGTTAAACCGTGTTTCAGAGTTAC
TTCACCGTATTGACTACTACAGTGGCAGGCCACTCACTCGGCTAGCGGTAGAATTGACTTTATTGGTCTTTATCCGTTCC
AGTGAATTACGCTTTGCCCGTTGGTCAGAAGTAGATTTTGAAACCGCCATGTGGACCATCCCTGGAGAGCGTGAACCACT
GGAAGGTGTTAAACACTCGCATCGGGGCTCAAAAATGCGCACTCCCCATCTTGTCCCCTTATCCCGCCAGGCGCTCGCCA
TTCTGGAAAAGATCAAAAGCATGAGTGGAAATCGTGAGCTGATTTTTATCGGTGATCACGACCCACGTAAGCCCATGAGT
GAGAACACGGTGAACAAAGCCCTACGTGTTATGGGCTACGATACTAAAGTAGATGTCTGTGGGCACGGTTTTAGAACTAT
GGCCTGTAGTTCATTGATTGAGTCGGGATTGTGGTCTAGGGATGCAGTAGAAAGGCAGATGAGTCACCAGGAGCGCAACT
CTGTACGTGCGGCTTATATTCATAAAGCCGAGCACTTAGATGAGCGTAAACTGATGATTCAGTGGTGGGCGGATTTTTTT
GGAGGCAAACAGGCAGCAAGCTATTTCACCTTTTGA

Upstream 100 bases:

>100_bases
GATTCAATCTACATCAACTTACTGATGTGGGTACAAATGCGGGTATATCCCGGTTCGATAATGTTTGTACCCACACAGAA
CCCTTGAAAGGATACTCAAC

Downstream 100 bases:

>100_bases
TTATGCAAAAGTAAATAATCCATTCAAATAACCATAACTAGCCTTTTATCGTAATACATCTCATTCAATAATTTTTTATA
TCACTGCAAACCTCTGTCAA

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MALSDVKVRSAKPEEKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGIYPEISLADARARRDEARKQLANGVD
PSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSARVLKSLEDNLFQSIGKRNITDLGTRDLLPPIKAVEMSGRLE
VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKSMSGNRELIFIGDHDPRKPMS
ENTVNKALRVMGYDTKVDVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERKLMIQWWADFF
GGKQAASYFTF

Sequences:

>Translated_411_residues
MALSDVKVRSAKPEEKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGIYPEISLADARARRDEARKQLANGVD
PSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSARVLKSLEDNLFQSIGKRNITDLGTRDLLPPIKAVEMSGRLE
VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKSMSGNRELIFIGDHDPRKPMS
ENTVNKALRVMGYDTKVDVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERKLMIQWWADFF
GGKQAASYFTF
>Mature_410_residues
ALSDVKVRSAKPEEKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGIYPEISLADARARRDEARKQLANGVDP
SESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSARVLKSLEDNLFQSIGKRNITDLGTRDLLPPIKAVEMSGRLEV
ASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRSS
ELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKSMSGNRELIFIGDHDPRKPMSE
NTVNKALRVMGYDTKVDVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERKLMIQWWADFFG
GKQAASYFTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=409, Percent_Identity=35.2078239608802, Blast_Score=248, Evalue=8e-67,
Organism=Escherichia coli, GI1788690, Length=403, Percent_Identity=33.0024813895782, Blast_Score=228, Evalue=8e-61,
Organism=Escherichia coli, GI145693166, Length=400, Percent_Identity=34.75, Blast_Score=227, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46805; Mature: 46674

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSDVKVRSAKPEEKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGIYPEIS
CCCCCCCCCCCCCHHHCEEEECCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCC
LADARARRDEARKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VLKSLEDNLFQSIGKRNITDLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSG
HHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKS
CCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVDVCGHGFRTMACSSLIESGLWSR
CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCH
DAVERQMSHQERNSVRAAYIHKAEHLDERKLMIQWWADFFGGKQAASYFTF
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure 
ALSDVKVRSAKPEEKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGIYPEIS
CCCCCCCCCCCCHHHCEEEECCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCC
LADARARRDEARKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VLKSLEDNLFQSIGKRNITDLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSG
HHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKS
CCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVDVCGHGFRTMACSSLIESGLWSR
CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCH
DAVERQMSHQERNSVRAAYIHKAEHLDERKLMIQWWADFFGGKQAASYFTF
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]