Click here to switch to the map view.

The map label for this gene is cpdP [H]

Identifier: 153950582

GI number: 153950582

Start: 1315145

End: 1316182

Strand: Direct

Name: cpdP [H]

Synonym: YpsIP31758_1113

Alternate gene names: 153950582

Gene position: 1315145-1316182 (Clockwise)

Preceding gene: 153947154

Following gene: 153949317

Centisome position: 27.84

GC content: 46.92

Gene sequence:

>1038_bases
ATGTTATTGAAATATCTCTCGATTAAATCTGCATCAGATAAGATAAAGAGTGGTCTGCTAAAGACGGGCGTGATTTTATC
TTTCAGTCTCTTCAGTTCACTGTCCACTGCGGCTTTTGAGGTCGTGGCGCTTGGCGTTGATGGGGGTGTCAGTGATGGTA
ATCTGACCTCTTATCTGATTCGCAATGATAGCCAGCCGCTGTATTTGGGGCTGGATGCCGGTTCCGTGTTGCCAGGGATC
GCTCGTGCCTTGGAGAAAGGCCATTTTGCAGCGATCACCGATGCCATGGCCGCTCCGCTAACCCGGCAGGGCTATATTTT
TCGCCAGAGCATTAACAGTTATTTTATTAGCCATGCGCATTTAGATCATGTCTCTGGCCTGATTATCGGTTCACCGGATG
ACAGCAAGAAAACCATTTATGCTTCGGCTGATACCATTGATGTGCTGAGAAACTACTATTTTAACTGGCGCGTTTGGCCC
AATTTTACTGACAGCGGCAGTGGGACTCGTTTAGGGACCTACCGTATGCAGGTGGTGCGCCCTGCTCAGTCTTTGAGCTT
GGGGTTGACCCGCTTAACGGGGGAAATGTATCCACTGAGTCATGATAAATCGCCCTCATCCATGCTGCTTATCAGTAGTA
ATAATGAGTTCTTTGCCTATTTCGGTGATACCGGCCCGGATGATGTCGAAAAATCCAAAAATCTGGATACGGTCTGGCGC
AAACTGGCGGAGAAGGTTACACAACAACAACTGAAAGGGATGATTATTGAGGTCTCGTATCCTAATGATGTGGCAGACAA
TAAGTTGTTTGGCCACATGACACCAACGTGGTTGTTGAAAGAATTGAAAAAACTGGAGCAATACAGTGGGGAAGGCCAGC
CACTAAAAGGATTACCGGTGGTGATTAGCCACATAAAACCCTCATTCCAGCAGGGGCAGGATGTGCGTAAATTAATTCTC
TCTGAGTTGCAACAAGGCAATGATATGGGAATCGAATTTATCCTGATGGAACAAGGTGATAGCCAGAAATTCCAGTGA

Upstream 100 bases:

>100_bases
TCCCGTTGGTTGATCACAAGCAAGCCAGATTGGCTACACTCGCGGCATTTGAAGCCGCTAAGCGGGATAGCACAAGGATC
CCTAATCGCAAGGAGCCTTC

Downstream 100 bases:

>100_bases
CTTGCGGTTGGCTTTTCTTTTATAGGATGAAAATAGCCAGGTGACGAAAATAGCTATATGACGAAAATAGCCAGGTGACA
AAAATAGTCCCCGCGCTGTA

Product: 3',5'-cyclic-nucleotide phosphodiesterase

Products: NA

Alternate protein names: 3':5'-CNP; PDEase [H]

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MLLKYLSIKSASDKIKSGLLKTGVILSFSLFSSLSTAAFEVVALGVDGGVSDGNLTSYLIRNDSQPLYLGLDAGSVLPGI
ARALEKGHFAAITDAMAAPLTRQGYIFRQSINSYFISHAHLDHVSGLIIGSPDDSKKTIYASADTIDVLRNYYFNWRVWP
NFTDSGSGTRLGTYRMQVVRPAQSLSLGLTRLTGEMYPLSHDKSPSSMLLISSNNEFFAYFGDTGPDDVEKSKNLDTVWR
KLAEKVTQQQLKGMIIEVSYPNDVADNKLFGHMTPTWLLKELKKLEQYSGEGQPLKGLPVVISHIKPSFQQGQDVRKLIL
SELQQGNDMGIEFILMEQGDSQKFQ

Sequences:

>Translated_345_residues
MLLKYLSIKSASDKIKSGLLKTGVILSFSLFSSLSTAAFEVVALGVDGGVSDGNLTSYLIRNDSQPLYLGLDAGSVLPGI
ARALEKGHFAAITDAMAAPLTRQGYIFRQSINSYFISHAHLDHVSGLIIGSPDDSKKTIYASADTIDVLRNYYFNWRVWP
NFTDSGSGTRLGTYRMQVVRPAQSLSLGLTRLTGEMYPLSHDKSPSSMLLISSNNEFFAYFGDTGPDDVEKSKNLDTVWR
KLAEKVTQQQLKGMIIEVSYPNDVADNKLFGHMTPTWLLKELKKLEQYSGEGQPLKGLPVVISHIKPSFQQGQDVRKLIL
SELQQGNDMGIEFILMEQGDSQKFQ
>Mature_345_residues
MLLKYLSIKSASDKIKSGLLKTGVILSFSLFSSLSTAAFEVVALGVDGGVSDGNLTSYLIRNDSQPLYLGLDAGSVLPGI
ARALEKGHFAAITDAMAAPLTRQGYIFRQSINSYFISHAHLDHVSGLIIGSPDDSKKTIYASADTIDVLRNYYFNWRVWP
NFTDSGSGTRLGTYRMQVVRPAQSLSLGLTRLTGEMYPLSHDKSPSSMLLISSNNEFFAYFGDTGPDDVEKSKNLDTVWR
KLAEKVTQQQLKGMIIEVSYPNDVADNKLFGHMTPTWLLKELKKLEQYSGEGQPLKGLPVVISHIKPSFQQGQDVRKLIL
SELQQGNDMGIEFILMEQGDSQKFQ

Specific function: Unknown

COG id: COG5212

COG function: function code T; Low-affinity cAMP phosphodiesterase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cAMP phosphodiesterase class-II family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6321189, Length=304, Percent_Identity=25.9868421052632, Blast_Score=105, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000396 [H]

Pfam domain/function: PF02112 PDEase_II [H]

EC number: =3.1.4.17 [H]

Molecular weight: Translated: 38131; Mature: 38131

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00607 PDEASE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKYLSIKSASDKIKSGLLKTGVILSFSLFSSLSTAAFEVVALGVDGGVSDGNLTSYLI
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCEEEEEE
RNDSQPLYLGLDAGSVLPGIARALEKGHFAAITDAMAAPLTRQGYIFRQSINSYFISHAH
ECCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LDHVSGLIIGSPDDSKKTIYASADTIDVLRNYYFNWRVWPNFTDSGSGTRLGTYRMQVVR
HHHHCEEEEECCCCCCEEEEECCHHHHHHHHCEEEEEECCCCCCCCCCCEEEEEEEEEEC
PAQSLSLGLTRLTGEMYPLSHDKSPSSMLLISSNNEFFAYFGDTGPDDVEKSKNLDTVWR
CHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHCCCHHHHHH
KLAEKVTQQQLKGMIIEVSYPNDVADNKLFGHMTPTWLLKELKKLEQYSGEGQPLKGLPV
HHHHHHHHHHHCCEEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
VISHIKPSFQQGQDVRKLILSELQQGNDMGIEFILMEQGDSQKFQ
HHHHCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
>Mature Secondary Structure
MLLKYLSIKSASDKIKSGLLKTGVILSFSLFSSLSTAAFEVVALGVDGGVSDGNLTSYLI
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCEEEEEE
RNDSQPLYLGLDAGSVLPGIARALEKGHFAAITDAMAAPLTRQGYIFRQSINSYFISHAH
ECCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LDHVSGLIIGSPDDSKKTIYASADTIDVLRNYYFNWRVWPNFTDSGSGTRLGTYRMQVVR
HHHHCEEEEECCCCCCEEEEECCHHHHHHHHCEEEEEECCCCCCCCCCCEEEEEEEEEEC
PAQSLSLGLTRLTGEMYPLSHDKSPSSMLLISSNNEFFAYFGDTGPDDVEKSKNLDTVWR
CHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHCCCHHHHHH
KLAEKVTQQQLKGMIIEVSYPNDVADNKLFGHMTPTWLLKELKKLEQYSGEGQPLKGLPV
HHHHHHHHHHHCCEEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
VISHIKPSFQQGQDVRKLILSELQQGNDMGIEFILMEQGDSQKFQ
HHHHCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]