| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153950485
Identifier: 153950485
GI number: 153950485
Start: 2137288
End: 2138766
Strand: Reverse
Name: 153950485
Synonym: YpsIP31758_1844
Alternate gene names: NA
Gene position: 2138766-2137288 (Counterclockwise)
Preceding gene: 153947980
Following gene: 153948915
Centisome position: 45.28
GC content: 50.64
Gene sequence:
>1479_bases GTGGCAAAATCATTTTTACGCAGTGGAAGTTTGGACGATATTCTGGCGTTAGGTGAGAACGGGCAACCGATTTATACCTC TGCACTTCAGATCAGAGAAGCTTTACGCCTTAAAAAACAGCAACATATTGTTGATTGCTTGGCGATCCCCCAGATCAACG AACAAGGTAATCGCATTGATTGGTATGCTCCCTTCGAGGGGAAAGTCACCTCATGGATTGCCGCCTCGAGTACAGAACGC AAAGCCGCGGTGAAACAATTAGCCATCTGTCTGGCCAGTGCTAGCGATATCAGCTTGCGGGCTAAAAAATCGGAAAAAGC CGCACAACAGTTGTTCGGGGCATTACTCGCGAAAGCATTGCAATTCCCTGATCAAAACCATGTTTATCTGGTTTCTGGAA AGCCGGTCATTACGTTCTGGGGATTTGTCAGCCAAGATAAAAAAATGCGTAGCGATCCACTCGATTGCTTACGGCAGTCC ACTGACGTCGTTGAGTCGGCTATCAAAGTTGAATCTATCGTCAAAGCTGAATCTACCGTCGTACCGCCAGAAATACGGGC AAAAACGGTTGTCACACCCGCAGCGGTTGAGTTATCACCACAAGCCGACATTATCCCCACCCCGCAATTGGTGGCAGAGC CGGAGATCACAGTAGGGTCTGAGCTGATAAAAACGCCAGTTCGCTGGTTGCGTATCGGTGGAGTGCTTTCTATCGCCGCC TTGATTGGGGCACTCGTCGCACAGTTCAGTGGCAACCTACCCGGCAGTACCGCGCCTACGGCTGAAACTCAGTCTTCTAC GGCAGAGCACATGACAGAGCAACTCGAGCCATCGGCATCACATAAGCCCCAAGTGACAGCGGATGCCCTCGCGCCAGTAG AGCCAATAACCGCATCGGTTCCCCCACCAATCATGCAGCCACTATTACCGTTGGATCACGCCCCGGTCCCGCCCGACGCC AAAGTAGCTGCAGAGTTGATAGCTGCAGAGTCGATAGTTGCAGAACCGATGGCTGTAGAACCGATAGCTGTAGAACCGAT AGCTGTAGAACCGATAGCTGCAGAGCCTGTGACTCCCCCGGTGACACGGGCTAACAATAACGCGCTGATATTACCGGCTA ATGCGGTGAAAATTGGCTCCACGGCCTTTCTCAACGGTAATTGGCGTGCCATCCCTGAGATTAAAAGCTCACTCACGGGT AAACCACCGAGCCTGAGATATCAAATTAAACAAGGCAAGGGCAGCGTAAAAATCACCCATGGGGATAATGTAACGTGTCG TGCCAATGTCACCGCCGGGCTGATGAAATCAGGCAACTTGGTAATCAACAGCCGCTATCGAGCACAGTGCAGTGATGGTT CAAAATATCAAATACCTGAAATCGTCTGTAAACAAGGCACCACAGATATTGCCGATTGCAAAGGCCGCTATGATGCCAAC ACGACCCTTTCAATGACGATGACGCGTGAGAGTAAATAA
Upstream 100 bases:
>100_bases TATTCAAACGTTTGATTCCCCTTTATCAACACTAAAATAGTCGCTGTCGCAGATAACACATTATTTTCTGCCTTGAGCAT CACTAAAAGGTCTTTTTTGC
Downstream 100 bases:
>100_bases TATTATGTTGGCGACGATCACTGATTATAAACAGAAAATTACACTCATTCAGGATAGTGGGATCCAGTTCCTGGATTTTG CTTTAACGCCAGAATCAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: SsrAB Activated Protein; SsrAB Activated Gene; Virulence Factor; Virulence Effector Protein SrfA; Myosin Light Chain Kinase Smooth
Number of amino acids: Translated: 492; Mature: 491
Protein sequence:
>492_residues MAKSFLRSGSLDDILALGENGQPIYTSALQIREALRLKKQQHIVDCLAIPQINEQGNRIDWYAPFEGKVTSWIAASSTER KAAVKQLAICLASASDISLRAKKSEKAAQQLFGALLAKALQFPDQNHVYLVSGKPVITFWGFVSQDKKMRSDPLDCLRQS TDVVESAIKVESIVKAESTVVPPEIRAKTVVTPAAVELSPQADIIPTPQLVAEPEITVGSELIKTPVRWLRIGGVLSIAA LIGALVAQFSGNLPGSTAPTAETQSSTAEHMTEQLEPSASHKPQVTADALAPVEPITASVPPPIMQPLLPLDHAPVPPDA KVAAELIAAESIVAEPMAVEPIAVEPIAVEPIAAEPVTPPVTRANNNALILPANAVKIGSTAFLNGNWRAIPEIKSSLTG KPPSLRYQIKQGKGSVKITHGDNVTCRANVTAGLMKSGNLVINSRYRAQCSDGSKYQIPEIVCKQGTTDIADCKGRYDAN TTLSMTMTRESK
Sequences:
>Translated_492_residues MAKSFLRSGSLDDILALGENGQPIYTSALQIREALRLKKQQHIVDCLAIPQINEQGNRIDWYAPFEGKVTSWIAASSTER KAAVKQLAICLASASDISLRAKKSEKAAQQLFGALLAKALQFPDQNHVYLVSGKPVITFWGFVSQDKKMRSDPLDCLRQS TDVVESAIKVESIVKAESTVVPPEIRAKTVVTPAAVELSPQADIIPTPQLVAEPEITVGSELIKTPVRWLRIGGVLSIAA LIGALVAQFSGNLPGSTAPTAETQSSTAEHMTEQLEPSASHKPQVTADALAPVEPITASVPPPIMQPLLPLDHAPVPPDA KVAAELIAAESIVAEPMAVEPIAVEPIAVEPIAAEPVTPPVTRANNNALILPANAVKIGSTAFLNGNWRAIPEIKSSLTG KPPSLRYQIKQGKGSVKITHGDNVTCRANVTAGLMKSGNLVINSRYRAQCSDGSKYQIPEIVCKQGTTDIADCKGRYDAN TTLSMTMTRESK >Mature_491_residues AKSFLRSGSLDDILALGENGQPIYTSALQIREALRLKKQQHIVDCLAIPQINEQGNRIDWYAPFEGKVTSWIAASSTERK AAVKQLAICLASASDISLRAKKSEKAAQQLFGALLAKALQFPDQNHVYLVSGKPVITFWGFVSQDKKMRSDPLDCLRQST DVVESAIKVESIVKAESTVVPPEIRAKTVVTPAAVELSPQADIIPTPQLVAEPEITVGSELIKTPVRWLRIGGVLSIAAL IGALVAQFSGNLPGSTAPTAETQSSTAEHMTEQLEPSASHKPQVTADALAPVEPITASVPPPIMQPLLPLDHAPVPPDAK VAAELIAAESIVAEPMAVEPIAVEPIAVEPIAAEPVTPPVTRANNNALILPANAVKIGSTAFLNGNWRAIPEIKSSLTGK PPSLRYQIKQGKGSVKITHGDNVTCRANVTAGLMKSGNLVINSRYRAQCSDGSKYQIPEIVCKQGTTDIADCKGRYDANT TLSMTMTRESK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52494; Mature: 52363
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKSFLRSGSLDDILALGENGQPIYTSALQIREALRLKKQQHIVDCLAIPQINEQGNRID CCCHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE WYAPFEGKVTSWIAASSTERKAAVKQLAICLASASDISLRAKKSEKAAQQLFGALLAKAL EECCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHH QFPDQNHVYLVSGKPVITFWGFVSQDKKMRSDPLDCLRQSTDVVESAIKVESIVKAESTV CCCCCCCEEEEECCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC VPPEIRAKTVVTPAAVELSPQADIIPTPQLVAEPEITVGSELIKTPVRWLRIGGVLSIAA CCCCCCCEEEECCCEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LIGALVAQFSGNLPGSTAPTAETQSSTAEHMTEQLEPSASHKPQVTADALAPVEPITASV HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCC PPPIMQPLLPLDHAPVPPDAKVAAELIAAESIVAEPMAVEPIAVEPIAVEPIAAEPVTPP CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCEEECCCCCCCCCCC VTRANNNALILPANAVKIGSTAFLNGNWRAIPEIKSSLTGKPPSLRYQIKQGKGSVKITH CEECCCCEEEEECCCEEECCEEEECCCCEECHHHHHHCCCCCCCEEEEEECCCCCEEEEE GDNVTCRANVTAGLMKSGNLVINSRYRAQCSDGSKYQIPEIVCKQGTTDIADCKGRYDAN CCCEEEEECCCEEHHCCCCEEEECCEEEECCCCCCCCCHHHHHCCCCCCHHHCCCCCCCC TTLSMTMTRESK CEEEEEEECCCC >Mature Secondary Structure AKSFLRSGSLDDILALGENGQPIYTSALQIREALRLKKQQHIVDCLAIPQINEQGNRID CCHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE WYAPFEGKVTSWIAASSTERKAAVKQLAICLASASDISLRAKKSEKAAQQLFGALLAKAL EECCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHH QFPDQNHVYLVSGKPVITFWGFVSQDKKMRSDPLDCLRQSTDVVESAIKVESIVKAESTV CCCCCCCEEEEECCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC VPPEIRAKTVVTPAAVELSPQADIIPTPQLVAEPEITVGSELIKTPVRWLRIGGVLSIAA CCCCCCCEEEECCCEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LIGALVAQFSGNLPGSTAPTAETQSSTAEHMTEQLEPSASHKPQVTADALAPVEPITASV HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCC PPPIMQPLLPLDHAPVPPDAKVAAELIAAESIVAEPMAVEPIAVEPIAVEPIAAEPVTPP CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCEEECCCCCCCCCCC VTRANNNALILPANAVKIGSTAFLNGNWRAIPEIKSSLTGKPPSLRYQIKQGKGSVKITH CEECCCCEEEEECCCEEECCEEEECCCCEECHHHHHHCCCCCCCEEEEEECCCCCEEEEE GDNVTCRANVTAGLMKSGNLVINSRYRAQCSDGSKYQIPEIVCKQGTTDIADCKGRYDAN CCCEEEEECCCEEHHCCCCEEEECCEEEECCCCCCCCCHHHHHCCCCCCHHHCCCCCCCC TTLSMTMTRESK CEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA