Click here to switch to the map view.

The map label for this gene is priB [H]

Identifier: 153950450

GI number: 153950450

Start: 4103458

End: 4103775

Strand: Reverse

Name: priB [H]

Synonym: YpsIP31758_3638

Alternate gene names: 153950450

Gene position: 4103775-4103458 (Counterclockwise)

Preceding gene: 153950227

Following gene: 153949310

Centisome position: 86.88

GC content: 47.48

Gene sequence:

>318_bases
GTGACCACTAATCGTCTGGTACTTTCTGGCACTGTGTGCAAGACACCGGTTCGAAAAGTAAGTCCTTCTGGTATTCCGCA
TTGTCAATTTGTGCTTGAGCATCGATCAACACAGCAGGAAGCCGGATTTAGCCGACAAACATGGTGCAGAATGCCCATAG
TCGTTAGCGGACAGCAGTCACAAGCATTAACTCACAGCATAACGGTCGGCAGTCAGTTAACCGTTGAAGGCTTCATTAGC
TGCCATCAAGGTCGCAATGGGCTGAACAAATTGGTTCTGCATGCCGAGCAGATTGAATTTATAGATTCTGGAGACTAG

Upstream 100 bases:

>100_bases
CAATGGTTAAAGCGAAAGACGAACGCCGTGAGCGTCACGACTTCGCGTCAGAAGCCAATGATGATTCTGAAGCTGGGGAT
TCTGAAGAGTAATTGCCGTG

Downstream 100 bases:

>100_bases
CCAAATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTTACCGCGGAAGGCGTTGTAGAGATTGATTATAAAGATA
TCGCTACGCTGAAAAACTAT

Product: primosomal replication protein N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MTTNRLVLSGTVCKTPVRKVSPSGIPHCQFVLEHRSTQQEAGFSRQTWCRMPIVVSGQQSQALTHSITVGSQLTVEGFIS
CHQGRNGLNKLVLHAEQIEFIDSGD

Sequences:

>Translated_105_residues
MTTNRLVLSGTVCKTPVRKVSPSGIPHCQFVLEHRSTQQEAGFSRQTWCRMPIVVSGQQSQALTHSITVGSQLTVEGFIS
CHQGRNGLNKLVLHAEQIEFIDSGD
>Mature_104_residues
TTNRLVLSGTVCKTPVRKVSPSGIPHCQFVLEHRSTQQEAGFSRQTWCRMPIVVSGQQSQALTHSITVGSQLTVEGFISC
HQGRNGLNKLVLHAEQIEFIDSGD

Specific function: Binds single-stranded DNA at the primosome assembly site (PAS) [H]

COG id: COG2965

COG function: function code L; Primosomal replication protein N

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790645, Length=103, Percent_Identity=77.6699029126214, Blast_Score=181, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 11533; Mature: 11402

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTNRLVLSGTVCKTPVRKVSPSGIPHCQFVLEHRSTQQEAGFSRQTWCRMPIVVSGQQS
CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCEECCCEEEECCCC
QALTHSITVGSQLTVEGFISCHQGRNGLNKLVLHAEQIEFIDSGD
CCEEEEEECCCEEEHHHHHHHHCCCCCHHHHHHHHHHEEEEECCC
>Mature Secondary Structure 
TTNRLVLSGTVCKTPVRKVSPSGIPHCQFVLEHRSTQQEAGFSRQTWCRMPIVVSGQQS
CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCEECCCEEEECCCC
QALTHSITVGSQLTVEGFISCHQGRNGLNKLVLHAEQIEFIDSGD
CCEEEEEECCCEEEHHHHHHHHCCCCCHHHHHHHHHHEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA