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The map label for this gene is rhsD [C]

Identifier: 153950364

GI number: 153950364

Start: 476199

End: 478931

Strand: Reverse

Name: rhsD [C]

Synonym: YpsIP31758_0408

Alternate gene names: 153950364

Gene position: 478931-476199 (Counterclockwise)

Preceding gene: 153950831

Following gene: 153949316

Centisome position: 10.14

GC content: 47.97

Gene sequence:

>2733_bases
ATGTCCCCAAGTTTACTAACCCAGCTTTGCACCAACACCCCCAGTATTGCCGTTCACGATAACCGGGGGTTAGCCATTCG
CACACTGGCTTATAACCGCCGCAGTCATAATGAAACCGTTGACGAACTGAGCAGCCGCAACCGCTATAACGCCTCCGGTC
AGCTAATCGCCAGCCGCGACCCGCGCCTTGAGGTGGATAATTTTCGCTATCAATACAGCCTCAGCGGTGTTCCACTGCGT
ACCGACAGCGTCGATAGCGGCAGTACGCTGCAACTGGCAGATAGTGCTGGCCGCACGGTGCTCACGCGGGATGCACACCA
CACCCGCCGCTGGGTAGAGTATGAGACCGGTGAGCACAGTTTAGGCCGCCCACTAAGTTACCGCGAGCAAGCCAAAGGCG
GCCTGAAAACGGTTACCGACCGCTTTTTCTATGGCGAAAATAGCGAGCAGGATAAAGGCTGCAATCTGAACGGCCAGTGT
GTCCGCCATTACGACAGCGCCGGTTTACAGGCACTGATTAGCCAGTCGATTATTGGCGTGCCATTGCAGCAACAGCGCCG
TCTGTTGACGGATATCAAAGGCCCGGTTGACTGGTTTGGCGAGAAGGAGAACTGGGGCGTTCGCCTGAGTGAATCGCCGT
TTGTTAGCCATTGCACCACCAATGCTCTCGGCCAGTTAATCACGCAAACCGATGCCAAAGGCCATATCCAGCGCATGGCC
TATAACCGTGCCGGACAGCTTATCGGTTCGTGGTTAACGGTAAAAAATGGCATGGAGCAGCCCATTGTATACTCACTCAC
CTATTCGGCTGCTGGGCAAAAACTGCGCGAAGAGAGCGGCAACGGGGTCATTACCGAATACCGTTATGAGCCGCAAACCC
AGCGTTTAATCGGCATTAAAACCACCCGTCCGGCGAAGAAAGACCGCCCGACCCGGTTACAAGACCTGCGTTACGATTAT
GACCCGGTCGGGAATATTCTCGCCATCCATAACGACGCCGAAGCCACCCGCTTCTACCGTAATCAGAAAATCGTGCCGGA
AACCACTTACCGCTACGATGCACTGTATCAGCTTATCGAGGCCACTGGCCGTGAAGCCGATACCAACGGCATACAAAACA
GCCAGTTACCCGCGCTGGCGTTACTGAACGACAGCAACCAGTTCGTCAATTACACCCGCCACTACCACTATGACCGCGCC
GGTAACCTGCTAAAAATTCAGCACACAGGAGCCAGCCAATACAGTACCTATATCACGGTGTCCGATTCGTCCAATCATGG
CATTCAGCAACAAGATGGCATCACCGCCCATGATGTCCGCTCCCAGTTTGATGCGGCGGGTAATCAGCGACAACTGCAAC
CCGGTCAACTCCTTCACTGGAACAGCCGCAATCAGTTACAGCAAGTGGAGCCCGTGCCCCGCAACGACGGCATCAGTGAC
AGCGAAAACTATCTCTATGATGGCAGCGGTAGCCGGGTGGTCAAAATCAGTCTCCATAAAACCCATAACGCCATCCAAAC
CCGTTCAGTCATTTATTTAGCGGGACTGGAACTGCGTAGCCAATATAATGGCAATAATCTGACAGAAGATTTTCAGGTGA
TGACCGTGGGTGCCGCGGGCCGTGCTCAGGTACGGGTATTACACTGGGAGCGCGGCCAACCCGCTGATATCGTCAATGAC
CAACTGCGTTACAGTTTCGATAACCACATTGGCTCGGCGTTAATCGAATTAGACAGCGACGGCGATATTATCAGCCAGGA
AGAATATTACCCATTTGGCGGCACCGCGGTGTTAGCCTCCCGTAATACCATGGAAGCTAAATATAAAACCGTTCGTTACT
CCGGTAAAGAGCGTGACACCACCGGACTGTATTATTACGGTTACCGTTATTACCAGCCATGGCTGGGCCGATGGTTAAGC
GCCGACCCCGCAGGCACTATAGACGGGCTGAATTTATACCGAATGGTGAGGAATAACCCAGTGGGGTTAATGGATGGGGA
TGGAAGAGCCCCGATTGTATTAAATGAATCAATTGAAAAAGAAGAGGAAACAAAAGAAACAAAAGAAACAAAAGAAACAA
AAGAAACTGAAAAAATAACCGCTATATCTAGCCATGCTATTAACAATATATCACCGACAGAACCGAGGGAAACCATCACT
GCTCACACACTATTAACATCAGAACCTACTTATACGCCGCATGCCGTTTATGATCGAGAAAAAAGAAAAAAACGCGATTT
AGTAAAACATATCTATGAAATAAGTGAACCTAAGTCATACAATTGCTTTACTCGTGCCAAAGCTATTTTTTTATCAGTAA
GAGACAGTAAAATAACAGTGCCAACAAGTAATGTACTTTTATTTAATCACCATCTTTCCAATAAGTTAGAACTACAAGAA
AGCAATTGGATGAAAAAAGAAGAAATCCCTTCATTTATTGCATCCAATGATGAGAAAATAAATAATTATATTATCAGAGG
TAAAATAAGGGAAGAGGCCGGACCGTCATTATTTAATCCTGGCCGTTATTTTGGTCATTTCTTTAACATAGCTGATATGG
GGAGTGGATGGACAGTTATGGATGCTTATTTTGACTATAGTGGTAAAAACTTCTTCCACTGGCTTGCAAATAAAACAACC
CTTGAAAATGAAGAGATATATTCTAAATTTAAACTCTATTATCCAAAGGTAAAATCCCAAAATTCATTACAAAAAAACAA
TTCTGATCTTTAA

Upstream 100 bases:

>100_bases
TGCCGGAGAACGAACAACTGACATAAAAGCAGCACGTGAGTACTCACGTTATTTATATAGCAAACAGAATCGATAATTAA
GAATATTAAGGAGCCATTTT

Downstream 100 bases:

>100_bases
AACGGTCCTATATTAGAGGAAAGGTTTATGAGCCAATATTTTATTCCATCACTTACTGCCAACACCCCCAGTATTGCCGT
TCACGATAACCGGGGGTTAG

Product: insecticidal toxin complex protein

Products: NA

Alternate protein names: Insecticidal xin Complex; Insecticidal xin Protein; Insecticidal xin Complex Protein; C Component Of Insecticidal xin Complex; Rhs Family Protein-Like Protein; YD Repeat Protein; Insecticidal xin; Zinc Finger C2H2-Type Domain-Containing Protein; FG-GAP Repeat Protein; Insecticidal xin SepC/Tcc Class; Insecticial xin; Integrins Alpha Chain; Insecticidal xin Complex-Like Protein; Insecticial xin Complex; Cytoplasmic Membrane Protein; Insecticidal xin SepC/TccC; Rhs Family Protein; Insecticidal xin Complex Protein TcaC; Insecticidal xin Complex TccC; Insecticidal xin Complex Protein Tccc

Number of amino acids: Translated: 910; Mature: 909

Protein sequence:

>910_residues
MSPSLLTQLCTNTPSIAVHDNRGLAIRTLAYNRRSHNETVDELSSRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLR
TDSVDSGSTLQLADSAGRTVLTRDAHHTRRWVEYETGEHSLGRPLSYREQAKGGLKTVTDRFFYGENSEQDKGCNLNGQC
VRHYDSAGLQALISQSIIGVPLQQQRRLLTDIKGPVDWFGEKENWGVRLSESPFVSHCTTNALGQLITQTDAKGHIQRMA
YNRAGQLIGSWLTVKNGMEQPIVYSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDY
DPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALALLNDSNQFVNYTRHYHYDRA
GNLLKIQHTGASQYSTYITVSDSSNHGIQQQDGITAHDVRSQFDAAGNQRQLQPGQLLHWNSRNQLQQVEPVPRNDGISD
SENYLYDGSGSRVVKISLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVMTVGAAGRAQVRVLHWERGQPADIVND
QLRYSFDNHIGSALIELDSDGDIISQEEYYPFGGTAVLASRNTMEAKYKTVRYSGKERDTTGLYYYGYRYYQPWLGRWLS
ADPAGTIDGLNLYRMVRNNPVGLMDGDGRAPIVLNESIEKEEETKETKETKETKETEKITAISSHAINNISPTEPRETIT
AHTLLTSEPTYTPHAVYDREKRKKRDLVKHIYEISEPKSYNCFTRAKAIFLSVRDSKITVPTSNVLLFNHHLSNKLELQE
SNWMKKEEIPSFIASNDEKINNYIIRGKIREEAGPSLFNPGRYFGHFFNIADMGSGWTVMDAYFDYSGKNFFHWLANKTT
LENEEIYSKFKLYYPKVKSQNSLQKNNSDL

Sequences:

>Translated_910_residues
MSPSLLTQLCTNTPSIAVHDNRGLAIRTLAYNRRSHNETVDELSSRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLR
TDSVDSGSTLQLADSAGRTVLTRDAHHTRRWVEYETGEHSLGRPLSYREQAKGGLKTVTDRFFYGENSEQDKGCNLNGQC
VRHYDSAGLQALISQSIIGVPLQQQRRLLTDIKGPVDWFGEKENWGVRLSESPFVSHCTTNALGQLITQTDAKGHIQRMA
YNRAGQLIGSWLTVKNGMEQPIVYSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDY
DPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALALLNDSNQFVNYTRHYHYDRA
GNLLKIQHTGASQYSTYITVSDSSNHGIQQQDGITAHDVRSQFDAAGNQRQLQPGQLLHWNSRNQLQQVEPVPRNDGISD
SENYLYDGSGSRVVKISLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVMTVGAAGRAQVRVLHWERGQPADIVND
QLRYSFDNHIGSALIELDSDGDIISQEEYYPFGGTAVLASRNTMEAKYKTVRYSGKERDTTGLYYYGYRYYQPWLGRWLS
ADPAGTIDGLNLYRMVRNNPVGLMDGDGRAPIVLNESIEKEEETKETKETKETKETEKITAISSHAINNISPTEPRETIT
AHTLLTSEPTYTPHAVYDREKRKKRDLVKHIYEISEPKSYNCFTRAKAIFLSVRDSKITVPTSNVLLFNHHLSNKLELQE
SNWMKKEEIPSFIASNDEKINNYIIRGKIREEAGPSLFNPGRYFGHFFNIADMGSGWTVMDAYFDYSGKNFFHWLANKTT
LENEEIYSKFKLYYPKVKSQNSLQKNNSDL
>Mature_909_residues
SPSLLTQLCTNTPSIAVHDNRGLAIRTLAYNRRSHNETVDELSSRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLRT
DSVDSGSTLQLADSAGRTVLTRDAHHTRRWVEYETGEHSLGRPLSYREQAKGGLKTVTDRFFYGENSEQDKGCNLNGQCV
RHYDSAGLQALISQSIIGVPLQQQRRLLTDIKGPVDWFGEKENWGVRLSESPFVSHCTTNALGQLITQTDAKGHIQRMAY
NRAGQLIGSWLTVKNGMEQPIVYSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDYD
PVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALALLNDSNQFVNYTRHYHYDRAG
NLLKIQHTGASQYSTYITVSDSSNHGIQQQDGITAHDVRSQFDAAGNQRQLQPGQLLHWNSRNQLQQVEPVPRNDGISDS
ENYLYDGSGSRVVKISLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVMTVGAAGRAQVRVLHWERGQPADIVNDQ
LRYSFDNHIGSALIELDSDGDIISQEEYYPFGGTAVLASRNTMEAKYKTVRYSGKERDTTGLYYYGYRYYQPWLGRWLSA
DPAGTIDGLNLYRMVRNNPVGLMDGDGRAPIVLNESIEKEEETKETKETKETKETEKITAISSHAINNISPTEPRETITA
HTLLTSEPTYTPHAVYDREKRKKRDLVKHIYEISEPKSYNCFTRAKAIFLSVRDSKITVPTSNVLLFNHHLSNKLELQES
NWMKKEEIPSFIASNDEKINNYIIRGKIREEAGPSLFNPGRYFGHFFNIADMGSGWTVMDAYFDYSGKNFFHWLANKTTL
ENEEIYSKFKLYYPKVKSQNSLQKNNSDL

Specific function: Rhs Elements Have A Nonessential Function. They May Play An Important Role In The Natural Ecology Of The Cell. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 103497; Mature: 103366

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPSLLTQLCTNTPSIAVHDNRGLAIRTLAYNRRSHNETVDELSSRNRYNASGQLIASRD
CCHHHHHHHHCCCCCEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCEEECCC
PRLEVDNFRYQYSLSGVPLRTDSVDSGSTLQLADSAGRTVLTRDAHHTRRWVEYETGEHS
CCEEECCEEEEEEECCCEEECCCCCCCCEEEEECCCCCEEEECCCHHHHHEEEECCCCCC
LGRPLSYREQAKGGLKTVTDRFFYGENSEQDKGCNLNGQCVRHYDSAGLQALISQSIIGV
CCCCCCHHHHHCCCHHHHHHHEECCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHHCCC
PLQQQRRLLTDIKGPVDWFGEKENWGVRLSESPFVSHCTTNALGQLITQTDAKGHIQRMA
CHHHHHHHHHHCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
YNRAGQLIGSWLTVKNGMEQPIVYSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIK
HHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE
TTRPAKKDRPTRLQDLRYDYDPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIE
CCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ATGREADTNGIQNSQLPALALLNDSNQFVNYTRHYHYDRAGNLLKIQHTGASQYSTYITV
HCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHEEECCCCCEEEEEECCCCCEEEEEEE
SDSSNHGIQQQDGITAHDVRSQFDAAGNQRQLQPGQLLHWNSRNQLQQVEPVPRNDGISD
ECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCC
SENYLYDGSGSRVVKISLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVMTVGAAG
CCCEEECCCCCEEEEEEEECCCCHHHHCCEEEEECCHHHHCCCCCCCCCCEEEEEECCCC
RAQVRVLHWERGQPADIVNDQLRYSFDNHIGSALIELDSDGDIISQEEYYPFGGTAVLAS
CEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEEEC
RNTMEAKYKTVRYSGKERDTTGLYYYGYRYYQPWLGRWLSADPAGTIDGLNLYRMVRNNP
CCCHHHHEEEEEECCCCCCCCEEEEEEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHCCC
VGLMDGDGRAPIVLNESIEKEEETKETKETKETKETEKITAISSHAINNISPTEPRETIT
CEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEE
AHTLLTSEPTYTPHAVYDREKRKKRDLVKHIYEISEPKSYNCFTRAKAIFLSVRDSKITV
EEEEEECCCCCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEEEECCCEEEE
PTSNVLLFNHHLSNKLELQESNWMKKEEIPSFIASNDEKINNYIIRGKIREEAGPSLFNP
CCCCEEEEECCCCCEEEECHHCCCCHHHHHHHHHCCCCCCCEEEEEEEEHHCCCCCCCCC
GRYFGHFFNIADMGSGWTVMDAYFDYSGKNFFHWLANKTTLENEEIYSKFKLYYPKVKSQ
HHHHHHHHHHEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHEECCCCCCC
NSLQKNNSDL
CCCCCCCCCC
>Mature Secondary Structure 
SPSLLTQLCTNTPSIAVHDNRGLAIRTLAYNRRSHNETVDELSSRNRYNASGQLIASRD
CHHHHHHHHCCCCCEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCEEECCC
PRLEVDNFRYQYSLSGVPLRTDSVDSGSTLQLADSAGRTVLTRDAHHTRRWVEYETGEHS
CCEEECCEEEEEEECCCEEECCCCCCCCEEEEECCCCCEEEECCCHHHHHEEEECCCCCC
LGRPLSYREQAKGGLKTVTDRFFYGENSEQDKGCNLNGQCVRHYDSAGLQALISQSIIGV
CCCCCCHHHHHCCCHHHHHHHEECCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHHCCC
PLQQQRRLLTDIKGPVDWFGEKENWGVRLSESPFVSHCTTNALGQLITQTDAKGHIQRMA
CHHHHHHHHHHCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
YNRAGQLIGSWLTVKNGMEQPIVYSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIK
HHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE
TTRPAKKDRPTRLQDLRYDYDPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIE
CCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ATGREADTNGIQNSQLPALALLNDSNQFVNYTRHYHYDRAGNLLKIQHTGASQYSTYITV
HCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHEEECCCCCEEEEEECCCCCEEEEEEE
SDSSNHGIQQQDGITAHDVRSQFDAAGNQRQLQPGQLLHWNSRNQLQQVEPVPRNDGISD
ECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCC
SENYLYDGSGSRVVKISLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVMTVGAAG
CCCEEECCCCCEEEEEEEECCCCHHHHCCEEEEECCHHHHCCCCCCCCCCEEEEEECCCC
RAQVRVLHWERGQPADIVNDQLRYSFDNHIGSALIELDSDGDIISQEEYYPFGGTAVLAS
CEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEEEC
RNTMEAKYKTVRYSGKERDTTGLYYYGYRYYQPWLGRWLSADPAGTIDGLNLYRMVRNNP
CCCHHHHEEEEEECCCCCCCCEEEEEEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHCCC
VGLMDGDGRAPIVLNESIEKEEETKETKETKETKETEKITAISSHAINNISPTEPRETIT
CEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEE
AHTLLTSEPTYTPHAVYDREKRKKRDLVKHIYEISEPKSYNCFTRAKAIFLSVRDSKITV
EEEEEECCCCCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEEEECCCEEEE
PTSNVLLFNHHLSNKLELQESNWMKKEEIPSFIASNDEKINNYIIRGKIREEAGPSLFNP
CCCCEEEEECCCCCEEEECHHCCCCHHHHHHHHHCCCCCCCEEEEEEEEHHCCCCCCCCC
GRYFGHFFNIADMGSGWTVMDAYFDYSGKNFFHWLANKTTLENEEIYSKFKLYYPKVKSQ
HHHHHHHHHHEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHEECCCCCCC
NSLQKNNSDL
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA