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The map label for this gene is ugpB [H]

Identifier: 153950306

GI number: 153950306

Start: 285749

End: 287068

Strand: Direct

Name: ugpB [H]

Synonym: YpsIP31758_0256

Alternate gene names: 153950306

Gene position: 285749-287068 (Clockwise)

Preceding gene: 153949217

Following gene: 153950917

Centisome position: 6.05

GC content: 46.74

Gene sequence:

>1320_bases
ATGTTTAATAATTCCATTCATAAAGTGTCGATCTGTATCGCGCTAACACTTACGTTTAGTGCCAATGCGATGGCAGTGAC
TGAAATTCCTTTTTGGCATTCGATGGAAGGAGAATTAGGTAAAGAAGTCGATTCAATTGCGGATCGTTTTAACCAGTCGC
AGCCCGATTATAAAATTGTTCCTGTTTATAAAGGTAATTACGAGCAGAGTTTGGCCGCAGGTATTGCGGCATTCCGTTCA
GGTAAGGCACCGGCTATTTTACAAGTCTATGAAGTCGGTACTGCCACCATGATGGCCAGTAAGGCGATCAAACCGGTTTA
CCAAGTCTTCAAAGATGCCAATATTGATTTTGATGAGTCCGTCTTCGTTCCAACAGTGGCAGGCTATTACACTGATTCTA
AAACTGGGCGTTTATTGTCTCAGCCGTTTAACAGCTCGACCCCCGTGTTGTATTACAACAAAGAGGCTTTCAAAAAAGCG
GGCTTGGACCCAGAACAACCGCCAAAAACATGGCAAGAACTGGCAGCAGATACCGCTAAGCTACGCGCTGCGGGTTCTAG
TTGCGGTTATGCCAGCGGTTGGCAAGGGTGGATTCAAATTGAAAACTTCAGTGCCTGGCATGGTCAGCCGATAGCCAGCC
GCAACAATGGTTTTGACGGCACTGATGCGGTATTGGAATTCAATAAACCCTTGCAGGTCAAACATATCCAATTACTGTCG
GATATGAATAAAAAAGGCGATTTCACCTATTTTGGCCGTAAAGATGAATCTACGTCCAAGTTCTATAACGGTGATTGCGC
TATTACCACCGCCTCTTCTGGCTCCCTCGCCAGTATCCGCCATTATGCCAAGTTCAATTTCGGTGTTGGCATGATGCCGT
ATGACGCAGATGCAAAAAATGCGCCGCAAAACGCCATTATTGGTGGTGCTAGCCTGTGGGTGATGGATGGCAAAGATAAA
GAGACTTACAAGGGTGTCGCAGAGTTCTTGCAATATTTGGTCAAACCAGAGATTGCCGCTGAATGGCATCAGAAGACGGG
TTATCTGCCTATCACGACGGCGGCATATGAACTAACGAAACAACAAGGTTTTTATGAGCAGAACCCAGGCGCTGATGTAG
CGACCCGCCAGATGCTGAATAAACCGCCATTGCCTTATACCAAAGGTCTGCGTCTCGGCAATATGCCGCAGATCCGTACC
GTAGTTGATGAAGAGCTGGAAGCCGTATGGACCGGTAAGAAGACGCCTCAGGCGGCATTGGATAACTCTGTGAAGCGGGG
TGATGTGTTACTGCGTCGTTTTGAACAAGCCAATAAATAA

Upstream 100 bases:

>100_bases
GAAAAGATGTCATGTTTGCTTCCGAACAAAAACTGATTTATTTCGCTCATTCACACTTATTTTTTGATGTGAGCCACACA
GATTTATTCAGGGGCCAGAT

Downstream 100 bases:

>100_bases
CGTTATTTGGCTACGGTATCTGCCCGTTTGATATTGGGCAGAGCTCGGTCTACTCGCGTAATGCACTTGGTTTTATAACA
CCAGGTGTATACACCGGAAC

Product: glycerol-3-phosphate ABC transporter periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MFNNSIHKVSICIALTLTFSANAMAVTEIPFWHSMEGELGKEVDSIADRFNQSQPDYKIVPVYKGNYEQSLAAGIAAFRS
GKAPAILQVYEVGTATMMASKAIKPVYQVFKDANIDFDESVFVPTVAGYYTDSKTGRLLSQPFNSSTPVLYYNKEAFKKA
GLDPEQPPKTWQELAADTAKLRAAGSSCGYASGWQGWIQIENFSAWHGQPIASRNNGFDGTDAVLEFNKPLQVKHIQLLS
DMNKKGDFTYFGRKDESTSKFYNGDCAITTASSGSLASIRHYAKFNFGVGMMPYDADAKNAPQNAIIGGASLWVMDGKDK
ETYKGVAEFLQYLVKPEIAAEWHQKTGYLPITTAAYELTKQQGFYEQNPGADVATRQMLNKPPLPYTKGLRLGNMPQIRT
VVDEELEAVWTGKKTPQAALDNSVKRGDVLLRRFEQANK

Sequences:

>Translated_439_residues
MFNNSIHKVSICIALTLTFSANAMAVTEIPFWHSMEGELGKEVDSIADRFNQSQPDYKIVPVYKGNYEQSLAAGIAAFRS
GKAPAILQVYEVGTATMMASKAIKPVYQVFKDANIDFDESVFVPTVAGYYTDSKTGRLLSQPFNSSTPVLYYNKEAFKKA
GLDPEQPPKTWQELAADTAKLRAAGSSCGYASGWQGWIQIENFSAWHGQPIASRNNGFDGTDAVLEFNKPLQVKHIQLLS
DMNKKGDFTYFGRKDESTSKFYNGDCAITTASSGSLASIRHYAKFNFGVGMMPYDADAKNAPQNAIIGGASLWVMDGKDK
ETYKGVAEFLQYLVKPEIAAEWHQKTGYLPITTAAYELTKQQGFYEQNPGADVATRQMLNKPPLPYTKGLRLGNMPQIRT
VVDEELEAVWTGKKTPQAALDNSVKRGDVLLRRFEQANK
>Mature_439_residues
MFNNSIHKVSICIALTLTFSANAMAVTEIPFWHSMEGELGKEVDSIADRFNQSQPDYKIVPVYKGNYEQSLAAGIAAFRS
GKAPAILQVYEVGTATMMASKAIKPVYQVFKDANIDFDESVFVPTVAGYYTDSKTGRLLSQPFNSSTPVLYYNKEAFKKA
GLDPEQPPKTWQELAADTAKLRAAGSSCGYASGWQGWIQIENFSAWHGQPIASRNNGFDGTDAVLEFNKPLQVKHIQLLS
DMNKKGDFTYFGRKDESTSKFYNGDCAITTASSGSLASIRHYAKFNFGVGMMPYDADAKNAPQNAIIGGASLWVMDGKDK
ETYKGVAEFLQYLVKPEIAAEWHQKTGYLPITTAAYELTKQQGFYEQNPGADVATRQMLNKPPLPYTKGLRLGNMPQIRT
VVDEELEAVWTGKKTPQAALDNSVKRGDVLLRRFEQANK

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=419, Percent_Identity=82.3389021479714, Blast_Score=737, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48560; Mature: 48560

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNNSIHKVSICIALTLTFSANAMAVTEIPFWHSMEGELGKEVDSIADRFNQSQPDYKIV
CCCCCCEEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
PVYKGNYEQSLAAGIAAFRSGKAPAILQVYEVGTATMMASKAIKPVYQVFKDANIDFDES
EEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCC
VFVPTVAGYYTDSKTGRLLSQPFNSSTPVLYYNKEAFKKAGLDPEQPPKTWQELAADTAK
EECCEEEEEECCCCCCHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCHHHHHHHHHHHHH
LRAAGSSCGYASGWQGWIQIENFSAWHGQPIASRNNGFDGTDAVLEFNKPLQVKHIQLLS
HHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHEEECCCCCCHHHHHHHH
DMNKKGDFTYFGRKDESTSKFYNGDCAITTASSGSLASIRHYAKFNFGVGMMPYDADAKN
HCCCCCCEEEECCCCCCCCCEECCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
APQNAIIGGASLWVMDGKDKETYKGVAEFLQYLVKPEIAAEWHQKTGYLPITTAAYELTK
CCCCEEECCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEHHHHHHHH
QQGFYEQNPGADVATRQMLNKPPLPYTKGLRLGNMPQIRTVVDEELEAVWTGKKTPQAAL
HCCCCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
DNSVKRGDVLLRRFEQANK
HCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFNNSIHKVSICIALTLTFSANAMAVTEIPFWHSMEGELGKEVDSIADRFNQSQPDYKIV
CCCCCCEEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
PVYKGNYEQSLAAGIAAFRSGKAPAILQVYEVGTATMMASKAIKPVYQVFKDANIDFDES
EEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCC
VFVPTVAGYYTDSKTGRLLSQPFNSSTPVLYYNKEAFKKAGLDPEQPPKTWQELAADTAK
EECCEEEEEECCCCCCHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCHHHHHHHHHHHHH
LRAAGSSCGYASGWQGWIQIENFSAWHGQPIASRNNGFDGTDAVLEFNKPLQVKHIQLLS
HHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHEEECCCCCCHHHHHHHH
DMNKKGDFTYFGRKDESTSKFYNGDCAITTASSGSLASIRHYAKFNFGVGMMPYDADAKN
HCCCCCCEEEECCCCCCCCCEECCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
APQNAIIGGASLWVMDGKDKETYKGVAEFLQYLVKPEIAAEWHQKTGYLPITTAAYELTK
CCCCEEECCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEHHHHHHHH
QQGFYEQNPGADVATRQMLNKPPLPYTKGLRLGNMPQIRTVVDEELEAVWTGKKTPQAAL
HCCCCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
DNSVKRGDVLLRRFEQANK
HCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA