| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is ccmA [H]
Identifier: 153950303
GI number: 153950303
Start: 1627202
End: 1627858
Strand: Direct
Name: ccmA [H]
Synonym: YpsIP31758_1387
Alternate gene names: 153950303
Gene position: 1627202-1627858 (Clockwise)
Preceding gene: 153947331
Following gene: 153946937
Centisome position: 34.45
GC content: 48.86
Gene sequence:
>657_bases ATGCTGGAAGCAAAAAATCTGACCTGTATCCGCGATGATCGCTGTTTATTTCAGCAGTTGAGTTTCTGTATCGCACCAGG CGAGATCGTGCAGATTGAAGGGCCAAATGGGGCAGGAAAGACCAGTTTACTGCGTATTTTAGCCGGTCTTGCTGAGGCCG ATGAGGGGCAAGTGAACTGGCGAGATAATAATATTCGTCGGGATCTCGCCAAATATCATCAGGATTTATTGTTTCTAGGC CATCAACCGGGAATTAAATCTGTGCTGACACCGTTTGAAAATCTGCTGTTCTATCAATCGGTTTTTCAGAAGGTTGATAG CGCCGCCATCTGGCAGGCATTAGCTCAGGTTGGGTTGGTAGGGTATGAAGATTTACCGGTATCTCAGTTATCGGCGGGGC AGCAACGTCGAGTGGCCTTGGCTCGCTTGTGGTTAAGTCCGGCACCTTTGTGGATTTTGGATGAGCCGCTGACCGCTATC GATAAGCAAGGGGTCAGTACGTTGTTGGCCCTGTTTATACAACATGCGGCTAAGGGCGGAATGGTGCTGTTGACCACGCA TCAGGATTTGGGCGCGGTTAGTCACAATGTCCGTAAAATTTGTTTAGCCAACACGCAGGAGAAGTCATGTTTATCAGCGT GTTGCGCCGTGAATTAA
Upstream 100 bases:
>100_bases GGTAGGGATAGTCTTAGGCGTTCCCTACGTAAGGGTTAAGCCTTATGTTATCATTCGGTTTTCCTGAACTGGCCATCCGA CGATCGGAAGACACCCCCTT
Downstream 100 bases:
>100_bases AAATAGCCTTTAGAAAAGGTGCGGAAATCGTTAACCCGCTGTGGTTCTTTTTGATCGTTATTACGCTGTTCCCATTGGGG ATAGGCCCAGAGCCACAATT
Product: cytochrome C biogenesis protein CcmA
Products: NA
Alternate protein names: Heme exporter protein A [H]
Number of amino acids: Translated: 218; Mature: 218
Protein sequence:
>218_residues MLEAKNLTCIRDDRCLFQQLSFCIAPGEIVQIEGPNGAGKTSLLRILAGLAEADEGQVNWRDNNIRRDLAKYHQDLLFLG HQPGIKSVLTPFENLLFYQSVFQKVDSAAIWQALAQVGLVGYEDLPVSQLSAGQQRRVALARLWLSPAPLWILDEPLTAI DKQGVSTLLALFIQHAAKGGMVLLTTHQDLGAVSHNVRKICLANTQEKSCLSACCAVN
Sequences:
>Translated_218_residues MLEAKNLTCIRDDRCLFQQLSFCIAPGEIVQIEGPNGAGKTSLLRILAGLAEADEGQVNWRDNNIRRDLAKYHQDLLFLG HQPGIKSVLTPFENLLFYQSVFQKVDSAAIWQALAQVGLVGYEDLPVSQLSAGQQRRVALARLWLSPAPLWILDEPLTAI DKQGVSTLLALFIQHAAKGGMVLLTTHQDLGAVSHNVRKICLANTQEKSCLSACCAVN >Mature_218_residues MLEAKNLTCIRDDRCLFQQLSFCIAPGEIVQIEGPNGAGKTSLLRILAGLAEADEGQVNWRDNNIRRDLAKYHQDLLFLG HQPGIKSVLTPFENLLFYQSVFQKVDSAAIWQALAQVGLVGYEDLPVSQLSAGQQRRVALARLWLSPAPLWILDEPLTAI DKQGVSTLLALFIQHAAKGGMVLLTTHQDLGAVSHNVRKICLANTQEKSCLSACCAVN
Specific function: Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system [H]
COG id: COG4133
COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=193, Percent_Identity=29.0155440414508, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI105990541, Length=168, Percent_Identity=27.9761904761905, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI27436953, Length=187, Percent_Identity=31.5508021390374, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI45446740, Length=195, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI47078218, Length=195, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI215820660, Length=184, Percent_Identity=29.3478260869565, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI20143975, Length=184, Percent_Identity=29.3478260869565, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI30795238, Length=192, Percent_Identity=26.0416666666667, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI150417984, Length=189, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI157502203, Length=199, Percent_Identity=30.1507537688442, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI157502201, Length=199, Percent_Identity=30.1507537688442, Blast_Score=67, Evalue=8e-12, Organism=Homo sapiens, GI27881501, Length=192, Percent_Identity=26.0416666666667, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI31657092, Length=180, Percent_Identity=25.5555555555556, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI87082064, Length=206, Percent_Identity=55.8252427184466, Blast_Score=209, Evalue=1e-55, Organism=Escherichia coli, GI87081709, Length=174, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1790544, Length=186, Percent_Identity=30.6451612903226, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788225, Length=201, Percent_Identity=28.8557213930348, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787370, Length=207, Percent_Identity=30.9178743961353, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1787029, Length=195, Percent_Identity=28.7179487179487, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1788761, Length=151, Percent_Identity=32.4503311258278, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786872, Length=163, Percent_Identity=30.0613496932515, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1788165, Length=220, Percent_Identity=29.5454545454545, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1787712, Length=166, Percent_Identity=31.3253012048193, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI87081782, Length=190, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87081791, Length=166, Percent_Identity=30.7228915662651, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787041, Length=169, Percent_Identity=28.9940828402367, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790525, Length=220, Percent_Identity=25.9090909090909, Blast_Score=67, Evalue=7e-13, Organism=Escherichia coli, GI1789586, Length=201, Percent_Identity=26.3681592039801, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1789593, Length=209, Percent_Identity=27.7511961722488, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789873, Length=188, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1789672, Length=190, Percent_Identity=25.7894736842105, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1786563, Length=204, Percent_Identity=28.921568627451, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1787105, Length=184, Percent_Identity=27.7173913043478, Blast_Score=61, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17565586, Length=169, Percent_Identity=27.2189349112426, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17559834, Length=177, Percent_Identity=27.1186440677966, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=206, Percent_Identity=27.1844660194175, Blast_Score=73, Evalue=4e-14, Organism=Drosophila melanogaster, GI19920532, Length=170, Percent_Identity=30.5882352941176, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24580930, Length=170, Percent_Identity=30.5882352941176, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI28574744, Length=184, Percent_Identity=28.2608695652174, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI28574533, Length=171, Percent_Identity=28.0701754385965, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI161076682, Length=184, Percent_Identity=27.7173913043478, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI161076684, Length=184, Percent_Identity=27.7173913043478, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24581617, Length=184, Percent_Identity=27.7173913043478, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24581615, Length=184, Percent_Identity=27.7173913043478, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI85724858, Length=165, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI85724856, Length=165, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24580547, Length=165, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24580551, Length=165, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24580549, Length=165, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24580545, Length=165, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR005895 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.41 [H]
Molecular weight: Translated: 23903; Mature: 23903
Theoretical pI: Translated: 6.99; Mature: 6.99
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEAKNLTCIRDDRCLFQQLSFCIAPGEIVQIEGPNGAGKTSLLRILAGLAEADEGQVNW CCCCCCCCEEECHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEC RDNNIRRDLAKYHQDLLFLGHQPGIKSVLTPFENLLFYQSVFQKVDSAAIWQALAQVGLV CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GYEDLPVSQLSAGQQRRVALARLWLSPAPLWILDEPLTAIDKQGVSTLLALFIQHAAKGG CCCCCCHHHHCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC MVLLTTHQDLGAVSHNVRKICLANTQEKSCLSACCAVN EEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC >Mature Secondary Structure MLEAKNLTCIRDDRCLFQQLSFCIAPGEIVQIEGPNGAGKTSLLRILAGLAEADEGQVNW CCCCCCCCEEECHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEC RDNNIRRDLAKYHQDLLFLGHQPGIKSVLTPFENLLFYQSVFQKVDSAAIWQALAQVGLV CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GYEDLPVSQLSAGQQRRVALARLWLSPAPLWILDEPLTAIDKQGVSTLLALFIQHAAKGG CCCCCCHHHHCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC MVLLTTHQDLGAVSHNVRKICLANTQEKSCLSACCAVN EEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA