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The map label for this gene is dmsD [H]

Identifier: 153950300

GI number: 153950300

Start: 3666165

End: 3666845

Strand: Reverse

Name: dmsD [H]

Synonym: YpsIP31758_3258

Alternate gene names: 153950300

Gene position: 3666845-3666165 (Counterclockwise)

Preceding gene: 153948642

Following gene: 153948975

Centisome position: 77.63

GC content: 50.07

Gene sequence:

>681_bases
ATGATTAAAACAGATATGACTTATCAAGACAGTGTTTATCAAAAAATCGGACTAACGGGGCGAGTGCTAGGTGCGCTTTT
TTATTGTGAGCCGGATAGCGCGGAGTGCCGCGATATTGTGGTGCAATTGCGTAATGGCGCGTGGGCCGCTGAATGGCCTT
ATGGTGGTGCAGACGAACTGATGCCGATTGCGACATTATTCGCGGCAGCTCAATCAGATCAGTATCAATCCATTGCTCAT
CAATCAGCGGCAGCCCCATTAGCAGAAACATTGGAAGAGGCTTGGCAGCGGCTGTTTATTGGTCCATATGCCTTGCCAGC
GCCGCCTTGGGGCTCCGTTTATCTGGATAAAGACATGGTGCTGTTTGGCGACTCCACACTAAAACTGCGTCACTGGATGC
AGCAGCGGCATGTTGAAGTCACATTGAAACAGCAGGAGCCTGAAGATCATTTCGGTTTATTGATGATGATGGCGGCCTGG
TTGGCAGAACATCAGCCGGTCGATCTCCCGGTTTTGTTAGCTGATCACTTATTACCCTGGAGTTATCGTTATCTGGCGTT
GTTGCAATCCGATGCAGGCCACCCGTTTTATCAAGGGTTGGCACAGTTGGCCACCCTGACCTTGACCCATTGGCAACATG
AATTGCAGGTGACACCGGCTAGGGTTGAGTTATATCGCTAA

Upstream 100 bases:

>100_bases
GCCTCATGGCGTGCTAAAACCAAGGTCATACAGGGCCGAACAACATGATCATAACAACATGATCATAACAATATGGTCGT
AAGAAAATGGTCGTAAGAAA

Downstream 100 bases:

>100_bases
ATCTGAACTTATTTATTTAAATCTGAACTTATTTATGTGATAACCCGCGTGACTTTTTACCGATATTACCGGTCAGGCTA
ATCAGTGAATCAAGGGGGAG

Product: twin-argninine leader-binding protein DmsD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MIKTDMTYQDSVYQKIGLTGRVLGALFYCEPDSAECRDIVVQLRNGAWAAEWPYGGADELMPIATLFAAAQSDQYQSIAH
QSAAAPLAETLEEAWQRLFIGPYALPAPPWGSVYLDKDMVLFGDSTLKLRHWMQQRHVEVTLKQQEPEDHFGLLMMMAAW
LAEHQPVDLPVLLADHLLPWSYRYLALLQSDAGHPFYQGLAQLATLTLTHWQHELQVTPARVELYR

Sequences:

>Translated_226_residues
MIKTDMTYQDSVYQKIGLTGRVLGALFYCEPDSAECRDIVVQLRNGAWAAEWPYGGADELMPIATLFAAAQSDQYQSIAH
QSAAAPLAETLEEAWQRLFIGPYALPAPPWGSVYLDKDMVLFGDSTLKLRHWMQQRHVEVTLKQQEPEDHFGLLMMMAAW
LAEHQPVDLPVLLADHLLPWSYRYLALLQSDAGHPFYQGLAQLATLTLTHWQHELQVTPARVELYR
>Mature_226_residues
MIKTDMTYQDSVYQKIGLTGRVLGALFYCEPDSAECRDIVVQLRNGAWAAEWPYGGADELMPIATLFAAAQSDQYQSIAH
QSAAAPLAETLEEAWQRLFIGPYALPAPPWGSVYLDKDMVLFGDSTLKLRHWMQQRHVEVTLKQQEPEDHFGLLMMMAAW
LAEHQPVDLPVLLADHLLPWSYRYLALLQSDAGHPFYQGLAQLATLTLTHWQHELQVTPARVELYR

Specific function: Binds to the twin-arginine signal peptide of dmsA and torA. Could be required for the biogenesis of DMSO reductase rather than for the targeting of dmsA to the inner membrane [H]

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Cytoplasm (By similarity). Note=Mainly cytoplasmic under aerobic conditions, and found in the inner membrane under anaerobic conditions (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081942, Length=224, Percent_Identity=46.4285714285714, Blast_Score=187, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 25667; Mature: 25667

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTDMTYQDSVYQKIGLTGRVLGALFYCEPDSAECRDIVVQLRNGAWAAEWPYGGADEL
CCCCCCCHHHHHHHHHCCHHHHHHEEEEECCCCCHHHHHHHHHHCCCEEECCCCCCHHHH
MPIATLFAAAQSDQYQSIAHQSAAAPLAETLEEAWQRLFIGPYALPAPPWGSVYLDKDMV
HHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEE
LFGDSTLKLRHWMQQRHVEVTLKQQEPEDHFGLLMMMAAWLAEHQPVDLPVLLADHLLPW
EECCCHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC
SYRYLALLQSDAGHPFYQGLAQLATLTLTHWQHELQVTPARVELYR
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEECHHEEEECC
>Mature Secondary Structure
MIKTDMTYQDSVYQKIGLTGRVLGALFYCEPDSAECRDIVVQLRNGAWAAEWPYGGADEL
CCCCCCCHHHHHHHHHCCHHHHHHEEEEECCCCCHHHHHHHHHHCCCEEECCCCCCHHHH
MPIATLFAAAQSDQYQSIAHQSAAAPLAETLEEAWQRLFIGPYALPAPPWGSVYLDKDMV
HHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEE
LFGDSTLKLRHWMQQRHVEVTLKQQEPEDHFGLLMMMAAWLAEHQPVDLPVLLADHLLPW
EECCCHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC
SYRYLALLQSDAGHPFYQGLAQLATLTLTHWQHELQVTPARVELYR
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEECHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]