| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153950249
Identifier: 153950249
GI number: 153950249
Start: 2985299
End: 2986144
Strand: Reverse
Name: 153950249
Synonym: YpsIP31758_2630
Alternate gene names: NA
Gene position: 2986144-2985299 (Counterclockwise)
Preceding gene: 153947781
Following gene: 153947576
Centisome position: 63.22
GC content: 48.94
Gene sequence:
>846_bases ATGAACCAAGGCGCGTTATTGGCTATTCTCGCCTCCCTGATTTTCAGCGTGATGAATGTGTTAGTCAAAACCATCGCTGA TGAAATTCCTACCGGTGAGATCGTGTTCTTCCGCAGTAGCATTGGTTGCTTGTTGATTGGGTTACTGATGTATCAGCGTG GGATAGCGTTCAGCCGTGAAGATCGCCCATTGTTGGTACTCCGGGGGACGATGGGCGCACTGTATCTGATTTGCTATTTT TACAGTATTGCTCACCTGACATTGGCAGATGCCAGCATGTTGGCCTATCTGTCACCGTTTTTCTCGATTGTGCTGTCATT ACTGGTGTTGCGCGAACGGGTGAATGCCACCATGGCTTTCTGGTTGGTGATGGTGATTATTGGCGCGATTATCTTGATCC GCCCGTGGAATTTTTCCACCTATACGTTGGCGTCTCTGGTGGGGGTGATGAGTGCGGTATTTGCGGCTATTGCTTATTTG TCGGTGAATAAGCTCACGAAGCGCCATCACAATTATGAAATCGTCTTCTACTTTTTATTTATCGCGACGCTGATCTCTAT CCCACTGATGTGGCATAACTTTGTTTGGCCGAGTGGGTATCAGTTCGGCATTCTCATCGCCATTGCTCTTGTCTCATTGC TAGGTCAGGTGGTTTTAACGCAGGCTTTCTCTTCGGACAACCTGATCGTGGTGTCGGTGGTGCGCTATATCGGCATTGTC TTCAATATTACCTGGGGCTGGCTATTTTGGGATGAGGTGCCATTGATGTTGTCGTTGATGGGGGGCGGGTTGGTGGTGGT ATCGTGCATTCAGTTGGGGTTACGCAGTAAAAAGAAGGCGGCCTGA
Upstream 100 bases:
>100_bases TTATTGACCGGGTCGGTGAGGAACATTGCCATCCCTCTTTATTGGGGGACGATTGTGACAGGCAGGCGGCCATCATCGAA CAACAATGGCGGAGCCAGAC
Downstream 100 bases:
>100_bases TATTCACACAAGGCAAACTGATCGTTATACCCCAAATAATTCGAGTGGCAGGAAGGCAGCCAACGCATAGGCAGCTTGAA GCATGACGGTTAGATAAGGC
Product: integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MNQGALLAILASLIFSVMNVLVKTIADEIPTGEIVFFRSSIGCLLIGLLMYQRGIAFSREDRPLLVLRGTMGALYLICYF YSIAHLTLADASMLAYLSPFFSIVLSLLVLRERVNATMAFWLVMVIIGAIILIRPWNFSTYTLASLVGVMSAVFAAIAYL SVNKLTKRHHNYEIVFYFLFIATLISIPLMWHNFVWPSGYQFGILIAIALVSLLGQVVLTQAFSSDNLIVVSVVRYIGIV FNITWGWLFWDEVPLMLSLMGGGLVVVSCIQLGLRSKKKAA
Sequences:
>Translated_281_residues MNQGALLAILASLIFSVMNVLVKTIADEIPTGEIVFFRSSIGCLLIGLLMYQRGIAFSREDRPLLVLRGTMGALYLICYF YSIAHLTLADASMLAYLSPFFSIVLSLLVLRERVNATMAFWLVMVIIGAIILIRPWNFSTYTLASLVGVMSAVFAAIAYL SVNKLTKRHHNYEIVFYFLFIATLISIPLMWHNFVWPSGYQFGILIAIALVSLLGQVVLTQAFSSDNLIVVSVVRYIGIV FNITWGWLFWDEVPLMLSLMGGGLVVVSCIQLGLRSKKKAA >Mature_281_residues MNQGALLAILASLIFSVMNVLVKTIADEIPTGEIVFFRSSIGCLLIGLLMYQRGIAFSREDRPLLVLRGTMGALYLICYF YSIAHLTLADASMLAYLSPFFSIVLSLLVLRERVNATMAFWLVMVIIGAIILIRPWNFSTYTLASLVGVMSAVFAAIAYL SVNKLTKRHHNYEIVFYFLFIATLISIPLMWHNFVWPSGYQFGILIAIALVSLLGQVVLTQAFSSDNLIVVSVVRYIGIV FNITWGWLFWDEVPLMLSLMGGGLVVVSCIQLGLRSKKKAA
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
Organism=Homo sapiens, GI23397492, Length=290, Percent_Identity=25.1724137931034, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI197927233, Length=290, Percent_Identity=25.1724137931034, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI24645940, Length=297, Percent_Identity=28.2828282828283, Blast_Score=94, Evalue=8e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31264; Mature: 31264
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQGALLAILASLIFSVMNVLVKTIADEIPTGEIVFFRSSIGCLLIGLLMYQRGIAFSRE CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCC DRPLLVLRGTMGALYLICYFYSIAHLTLADASMLAYLSPFFSIVLSLLVLRERVNATMAF CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLVMVIIGAIILIRPWNFSTYTLASLVGVMSAVFAAIAYLSVNKLTKRHHNYEIVFYFLF HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IATLISIPLMWHNFVWPSGYQFGILIAIALVSLLGQVVLTQAFSSDNLIVVSVVRYIGIV HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH FNITWGWLFWDEVPLMLSLMGGGLVVVSCIQLGLRSKKKAA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNQGALLAILASLIFSVMNVLVKTIADEIPTGEIVFFRSSIGCLLIGLLMYQRGIAFSRE CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCC DRPLLVLRGTMGALYLICYFYSIAHLTLADASMLAYLSPFFSIVLSLLVLRERVNATMAF CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLVMVIIGAIILIRPWNFSTYTLASLVGVMSAVFAAIAYLSVNKLTKRHHNYEIVFYFLF HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IATLISIPLMWHNFVWPSGYQFGILIAIALVSLLGQVVLTQAFSSDNLIVVSVVRYIGIV HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH FNITWGWLFWDEVPLMLSLMGGGLVVVSCIQLGLRSKKKAA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9252185 [H]