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The map label for this gene is quuD [H]

Identifier: 153950118

GI number: 153950118

Start: 2546909

End: 2547355

Strand: Reverse

Name: quuD [H]

Synonym: YpsIP31758_2239

Alternate gene names: 153950118

Gene position: 2547355-2546909 (Counterclockwise)

Preceding gene: 153948080

Following gene: 153947718

Centisome position: 53.93

GC content: 44.52

Gene sequence:

>447_bases
ATGAACCCGGTGAACAATAATTCAGCACAGCAATGTGGAAAAAGAGGACGTGATATTCAACTGGTTCTGGAGCGCTGGGG
AGGGTGGGCGGCGAATGAATATAGCGGTGTTGATTATTCTCACATTGCTGCCGGGTTTAAAGGGGTATTGCCGAATACGT
CAAAATCACGTCTGTCGTGCTGTGATAGTGATGGTCTGGTAGTCGATGCTGCTGTAGGGAGCTTAAAAAAAGTTGGCCGT
GATGAAGACTATGCTCTGATTGAGCAGCATTACAAAAAAGGTATTTCGAAGTCGGCCATCGCGCGAAAACAGAAGTGCTC
AGAGGGAAAAATCAGGCTTAAACTCATGATGGCTGAAACCTTCGTGGATGCCTGCCTGATTATGTCCGGGGCAAAATTAG
AAATGGATGAATGGACACATAAATCTGAAATTGAAAAAATTACATAA

Upstream 100 bases:

>100_bases
GTGACCGGCGTACCCGTTTTATTGATAGGGAGACAGTCCGACTGTACCACGCAGAAGGTGTTATGCGCACACAGGCTGTG
TTGAGGCAGGAGGGTAAGCT

Downstream 100 bases:

>100_bases
AAAAGCTATTCGTTACGAATTTTACCCGCTAGTGTGATAATAATGGTTATACGGTCAGTAGTGATAGGCTAATACAAAGA
ATATTACGCGAGATATTTTG

Product: phage antitermination protein Q

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MNPVNNNSAQQCGKRGRDIQLVLERWGGWAANEYSGVDYSHIAAGFKGVLPNTSKSRLSCCDSDGLVVDAAVGSLKKVGR
DEDYALIEQHYKKGISKSAIARKQKCSEGKIRLKLMMAETFVDACLIMSGAKLEMDEWTHKSEIEKIT

Sequences:

>Translated_148_residues
MNPVNNNSAQQCGKRGRDIQLVLERWGGWAANEYSGVDYSHIAAGFKGVLPNTSKSRLSCCDSDGLVVDAAVGSLKKVGR
DEDYALIEQHYKKGISKSAIARKQKCSEGKIRLKLMMAETFVDACLIMSGAKLEMDEWTHKSEIEKIT
>Mature_148_residues
MNPVNNNSAQQCGKRGRDIQLVLERWGGWAANEYSGVDYSHIAAGFKGVLPNTSKSRLSCCDSDGLVVDAAVGSLKKVGR
DEDYALIEQHYKKGISKSAIARKQKCSEGKIRLKLMMAETFVDACLIMSGAKLEMDEWTHKSEIEKIT

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=120, Percent_Identity=42.5, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 16327; Mature: 16327

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPVNNNSAQQCGKRGRDIQLVLERWGGWAANEYSGVDYSHIAAGFKGVLPNTSKSRLSC
CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHC
CDSDGLVVDAAVGSLKKVGRDEDYALIEQHYKKGISKSAIARKQKCSEGKIRLKLMMAET
CCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEHHHHHH
FVDACLIMSGAKLEMDEWTHKSEIEKIT
HHHHHHHHCCCCCCHHHHHCHHHHCCCC
>Mature Secondary Structure
MNPVNNNSAQQCGKRGRDIQLVLERWGGWAANEYSGVDYSHIAAGFKGVLPNTSKSRLSC
CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHC
CDSDGLVVDAAVGSLKKVGRDEDYALIEQHYKKGISKSAIARKQKCSEGKIRLKLMMAET
CCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEHHHHHH
FVDACLIMSGAKLEMDEWTHKSEIEKIT
HHHHHHHHCCCCCCHHHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]