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The map label for this gene is ymbA [H]

Identifier: 153949869

GI number: 153949869

Start: 2881492

End: 2882070

Strand: Reverse

Name: ymbA [H]

Synonym: YpsIP31758_2548

Alternate gene names: 153949869

Gene position: 2882070-2881492 (Counterclockwise)

Preceding gene: 153947481

Following gene: 153946982

Centisome position: 61.02

GC content: 49.4

Gene sequence:

>579_bases
ATGATGAAATGGATGGCAGTTATCGTCGCGCTGTTACTCAGTGCTTGCAGCAGCGAAACCAGCAAGACGTACTATCAGTT
ACCGGCACTTAATCAGTTACCGGCACTCAATGCGCCTGCTACAGTCAGTAGCAGCGTAGCATCACGGCAGTTGTGGGTGG
AACATGTCAGTGTGGCCGATTACCTTGCGGCGGTTGGTGTGGTGTATCAAACCAACGATGTGCAGTATGTTATTGCTAAC
AATAATCTCTGGGCTAGCCCACTAGACCAGCAGTTACAGCAAACGTTGGTGACCAACCTGAGTTATTCGCTACCGGAGTG
GCTCGTCTCTGCGCAGCCGTTGGATAGCGATCAGGATGTTCTCAATGTTACGGTAACCGGGTTCCATGGACGTTATGATG
GGCGTGCAGTAATACGGGGTGTCTGGATCCTAAAACATCAGGGGCAGTTGATTAAGCAGCCTTTCAATCTGGAGCTTAAA
CAGAGTGAAGATGGCTATGATGCACTGGTCCGTACATTGGCAGAAGGCTGGCAACAGGAAGCTAAAACTATCGCCGCTCA
ATTGCAAAAGATTAAGTAA

Upstream 100 bases:

>100_bases
GTGAATTACAACCGGTATTGCGAACACTGAATGAGAAGAGCAATGCGCTAGTATTTGAAGCAGCAGGAAGTCAGGATCCT
CAGCCTAAGAAGGCCAAAAA

Downstream 100 bases:

>100_bases
GATCTTTTTCTAAATCAGTCTAATCCTCTTTCTCTGGTAATAATCATCTTGTCAGGGGAAGGGGGTTTCTATTTAATATC
AATGCATTACCTTCATATGC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MMKWMAVIVALLLSACSSETSKTYYQLPALNQLPALNAPATVSSSVASRQLWVEHVSVADYLAAVGVVYQTNDVQYVIAN
NNLWASPLDQQLQQTLVTNLSYSLPEWLVSAQPLDSDQDVLNVTVTGFHGRYDGRAVIRGVWILKHQGQLIKQPFNLELK
QSEDGYDALVRTLAEGWQQEAKTIAAQLQKIK

Sequences:

>Translated_192_residues
MMKWMAVIVALLLSACSSETSKTYYQLPALNQLPALNAPATVSSSVASRQLWVEHVSVADYLAAVGVVYQTNDVQYVIAN
NNLWASPLDQQLQQTLVTNLSYSLPEWLVSAQPLDSDQDVLNVTVTGFHGRYDGRAVIRGVWILKHQGQLIKQPFNLELK
QSEDGYDALVRTLAEGWQQEAKTIAAQLQKIK
>Mature_192_residues
MMKWMAVIVALLLSACSSETSKTYYQLPALNQLPALNAPATVSSSVASRQLWVEHVSVADYLAAVGVVYQTNDVQYVIAN
NNLWASPLDQQLQQTLVTNLSYSLPEWLVSAQPLDSDQDVLNVTVTGFHGRYDGRAVIRGVWILKHQGQLIKQPFNLELK
QSEDGYDALVRTLAEGWQQEAKTIAAQLQKIK

Specific function: Unknown

COG id: COG3009

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693109, Length=192, Percent_Identity=57.2916666666667, Blast_Score=223, Evalue=8e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005586 [H]

Pfam domain/function: PF03886 DUF330 [H]

EC number: NA

Molecular weight: Translated: 21330; Mature: 21330

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKWMAVIVALLLSACSSETSKTYYQLPALNQLPALNAPATVSSSVASRQLWVEHVSVAD
CHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
YLAAVGVVYQTNDVQYVIANNNLWASPLDQQLQQTLVTNLSYSLPEWLVSAQPLDSDQDV
HHHHHHHEEECCCEEEEEECCCEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCE
LNVTVTGFHGRYDGRAVIRGVWILKHQGQLIKQPFNLELKQSEDGYDALVRTLAEGWQQE
EEEEEEEECCCCCCCEEHHEEEHEECCCHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHH
AKTIAAQLQKIK
HHHHHHHHHHCC
>Mature Secondary Structure
MMKWMAVIVALLLSACSSETSKTYYQLPALNQLPALNAPATVSSSVASRQLWVEHVSVAD
CHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
YLAAVGVVYQTNDVQYVIANNNLWASPLDQQLQQTLVTNLSYSLPEWLVSAQPLDSDQDV
HHHHHHHEEECCCEEEEEECCCEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCE
LNVTVTGFHGRYDGRAVIRGVWILKHQGQLIKQPFNLELKQSEDGYDALVRTLAEGWQQE
EEEEEEEECCCCCCCEEHHEEEHEECCCHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHH
AKTIAAQLQKIK
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]