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The map label for this gene is fliN2 [H]

Identifier: 153949693

GI number: 153949693

Start: 738096

End: 738509

Strand: Reverse

Name: fliN2 [H]

Synonym: YpsIP31758_0627

Alternate gene names: 153949693

Gene position: 738509-738096 (Counterclockwise)

Preceding gene: 153949575

Following gene: 153950465

Centisome position: 15.64

GC content: 45.17

Gene sequence:

>414_bases
ATGACTGACCAGCAAATTGAACTCAACAATGACCTCGACTTTACCCTTGCATTGGATGAGAGCGCCATTAGCCCAACTGA
GCATTTCGATTCGATGATTAATTCACCAGAGATCATTAATACGCCAGAAAAAACAGCCACAAAGACTGATGAGCAAAAGC
GCAAAATGTCACTGTTCAGCCGGATCCCTGTCACCTTAACACTGGAGGTAGCCTCTGTTGAGCTCCCGCTTTCAGAGTTG
CTGACGGTGAATAATGACTCGGTGATTGAGTTAGACAAATTGGCTGGCGAGCCGTTAGATATCCGGGTAAATGGCATCAT
GTTCGGCCAAGCCGAAGTGGTGGTGATTAATGAAAAATACGGCCTGCGTATTATTAACATCAATAGCCAAAATTTAGGTG
AACTCGCGCTATGA

Upstream 100 bases:

>100_bases
GTATTTATTGGCAAAGAAGCGTTATTCAGTGCCGCCATTACCGAGAACCGCGGCAAGTTATTCTTTTCTGAATTTAATGA
CCAACCCAACGAGATGAACC

Downstream 100 bases:

>100_bases
GCCGCAGCCTTCGAGCGATAACACCGGTAGCTATCATCAGCCGCGGCCTGCTGGTGGGCGGGCTGCTGTATTCCCCTCTT
CTGCTGGCGCAGGAGGGGGG

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MTDQQIELNNDLDFTLALDESAISPTEHFDSMINSPEIINTPEKTATKTDEQKRKMSLFSRIPVTLTLEVASVELPLSEL
LTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKYGLRIININSQNLGELAL

Sequences:

>Translated_137_residues
MTDQQIELNNDLDFTLALDESAISPTEHFDSMINSPEIINTPEKTATKTDEQKRKMSLFSRIPVTLTLEVASVELPLSEL
LTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKYGLRIININSQNLGELAL
>Mature_136_residues
TDQQIELNNDLDFTLALDESAISPTEHFDSMINSPEIINTPEKTATKTDEQKRKMSLFSRIPVTLTLEVASVELPLSELL
TVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKYGLRIININSQNLGELAL

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=66, Percent_Identity=51.5151515151515, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 15213; Mature: 15081

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQQIELNNDLDFTLALDESAISPTEHFDSMINSPEIINTPEKTATKTDEQKRKMSLFS
CCCCEEEECCCCEEEEEECCCCCCCHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHH
RIPVTLTLEVASVELPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKY
CCCEEEEEEEEEEECCHHHEEECCCCCEEEEHHHCCCCEEEEEEEEEECCEEEEEEECCC
GLRIININSQNLGELAL
CEEEEEECCCCCCCCCC
>Mature Secondary Structure 
TDQQIELNNDLDFTLALDESAISPTEHFDSMINSPEIINTPEKTATKTDEQKRKMSLFS
CCCEEEECCCCEEEEEECCCCCCCHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHH
RIPVTLTLEVASVELPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKY
CCCEEEEEEEEEEECCHHHEEECCCCCEEEEHHHCCCCEEEEEEEEEECCEEEEEEECCC
GLRIININSQNLGELAL
CEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]