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The map label for this gene is hslR [H]

Identifier: 153949573

GI number: 153949573

Start: 4460408

End: 4460815

Strand: Direct

Name: hslR [H]

Synonym: YpsIP31758_3976

Alternate gene names: 153949573

Gene position: 4460408-4460815 (Clockwise)

Preceding gene: 153949914

Following gene: 153948993

Centisome position: 94.43

GC content: 52.21

Gene sequence:

>408_bases
ATGAAGGATAAAATCTCCCCAGCGGAATCAGTACGTCTGGATAAATGGTTATGGGCCGCACGGTTTTATAAAACCAGAGC
GATCGCACGTGACATGGTGGATGGCGGTAAAGTCCACTATAACGGCCAGCGAAGCAAGCCCAGCAAGCTGGTTGAACTCC
ATGCTGAAATCCGTCTGCGGCAAGGGAATGATGAGCGCACGGTGCGTGTCTTGGCGTTACATAGTCAACGCCGGGGGGCA
GAGGAAGCCCAAACATTGTATGAAGAAACCGAGGCGAGCATTGCCAACCGCGAGAAAGTCGCACAGGCACGTAAACTGAA
TGCCCTGACGATGCCGCATCCAGATCGGCGGCCGGATAAAAAAGAACGTCGCAATCTGATCAAATTTAAACAAGGCGAGC
CTGAGTAA

Upstream 100 bases:

>100_bases
ACCTTTCACCGACACCCGGCAATCAATGACTATCGTAAACTGTTGCCCGCTTTACAGTTACGTTGTGAATAAAACAGTAT
GACGATGGGTAGGCGTATTT

Downstream 100 bases:

>100_bases
ACTCTATAGATTTCAACATGCAGGAAGGCGGCAAACGAAAGATAAATCGGTTGGGAGCAGACTTGAACGCTGCTTACAGC
CAGGCGAGTCACGAACGTAG

Product: heat shock protein 15

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKDKISPAESVRLDKWLWAARFYKTRAIARDMVDGGKVHYNGQRSKPSKLVELHAEIRLRQGNDERTVRVLALHSQRRGA
EEAQTLYEETEASIANREKVAQARKLNALTMPHPDRRPDKKERRNLIKFKQGEPE

Sequences:

>Translated_135_residues
MKDKISPAESVRLDKWLWAARFYKTRAIARDMVDGGKVHYNGQRSKPSKLVELHAEIRLRQGNDERTVRVLALHSQRRGA
EEAQTLYEETEASIANREKVAQARKLNALTMPHPDRRPDKKERRNLIKFKQGEPE
>Mature_135_residues
MKDKISPAESVRLDKWLWAARFYKTRAIARDMVDGGKVHYNGQRSKPSKLVELHAEIRLRQGNDERTVRVLALHSQRRGA
EEAQTLYEETEASIANREKVAQARKLNALTMPHPDRRPDKKERRNLIKFKQGEPE

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=135, Percent_Identity=73.3333333333333, Blast_Score=201, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 15714; Mature: 15714

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDKISPAESVRLDKWLWAARFYKTRAIARDMVDGGKVHYNGQRSKPSKLVELHAEIRLR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHEE
QGNDERTVRVLALHSQRRGAEEAQTLYEETEASIANREKVAQARKLNALTMPHPDRRPDK
CCCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
KERRNLIKFKQGEPE
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MKDKISPAESVRLDKWLWAARFYKTRAIARDMVDGGKVHYNGQRSKPSKLVELHAEIRLR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHEE
QGNDERTVRVLALHSQRRGAEEAQTLYEETEASIANREKVAQARKLNALTMPHPDRRPDK
CCCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
KERRNLIKFKQGEPE
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]