Click here to switch to the map view.

The map label for this gene is ynfM [H]

Identifier: 153949397

GI number: 153949397

Start: 2167277

End: 2168545

Strand: Direct

Name: ynfM [H]

Synonym: YpsIP31758_1871

Alternate gene names: 153949397

Gene position: 2167277-2168545 (Clockwise)

Preceding gene: 153950578

Following gene: 153948971

Centisome position: 45.88

GC content: 46.97

Gene sequence:

>1269_bases
GTGGCGCCAGCATCAACAAAAAATGATGATGACACTGTTTTCACTACGATCCCTAAACTGCCTCCCCTAAATAAGCGTCC
TTATATACAACAAGGTACGCCAGAATTCATCCGCGTTGCTCTGGCTTTATTTTCGGCGGGGTTAGCAACTTTCGCCCTGC
TTTACTGCGTACAACCTATTTTGCCCATGTTGTCGCAGGACTTTAGTACCTCTCCAGCGTCCAGCAGTTTGTCACTTTCG
ATAGCCACCGGGATGCTGGCGTTGGGTTTGATGTTTACCGGCCCCCTTTCTGATGCGATAGGCCGAAAATCAGTCATGGT
CGTGGCGTTGCTATTGGCCGCGGTTTGCACAATAGTTTGCTCTTTTATGACCAGTTGGCATGGGATTTTGCTAATGCGCG
CATTGACCGGTCTATCCTTAAGCGGAGTTGCCGCGGTGGCAATGACCTATTTGAGTGAAGAGATCCATCCTAATTTTATT
GCGCTATCAATGGGGTTGTATATCAGCGGTAGTTCTATTGGTGGCATGAGTGGGCGTTTGGTGGCTGGGGTATTAAGCGA
TCTCTTTTCCTGGCGCGTATCACTGCTAGTACTCGGATTATTTGCTTTAGCTGCTGCTTGCTTGTTTTGGTTTATCCTCC
CAGCGTCTAAACACTTTCGTGCAAGTTCATTGCGCCCCAGAACGTTGTTAATCAATTTTAAACTGCACTGGCGTGACTCC
GGCTTACCCCTACTATTTGCTGAAGGTTTTCTCATTATGGGGGGGTTCGTCACCTTATTTAATTATATCGGCTATCGGTT
ACTGGATGGGCCTTATTATCTCAGCCCGACCATCGTAGGGCTATTATCCATTGTTTATTTAACGGGTTCTTATAGTTCAC
CTAAAGCGGGTTCACTCAGTAATCGCTACGGGCGAGGCCTAATTTTATTGGCCTCTATCGGTATGATGTTGGTTGGTGTT
GTGATCACCAGTTTTCCGTCAGTGATCATGATTTTTATTGGTATGATGTTCGTTGCAGCAGGATTCTTTGCCGCTCACTC
CGTTGTCAGTAGCTGGGTTGGTTGCAGAGCACGTCGTGCTAAGGCACAAGCTTCGTCACTTTATCTGTTTTGTTACTATG
CCGGTTCCAGCGTAGCCGGTACGTTAGGTGGCGTTTTTTGGTTACATTTAGGCTGGACAGGTGTTGTTGTTTTTATTACC
GCCCTTTTAGTTATCGCGTTGTTTATCGCTCAGCGATTACGAAAGTTGGTAGGAACAGCCAAGCGTTGA

Upstream 100 bases:

>100_bases
CGTGTACTAATTTAACTGTATATTAATTTAACTGTGTACTAATTTGGCTATGTATTAATAAGGCTATACCGTGACTACTT
CATTACACACTACAAACACT

Downstream 100 bases:

>100_bases
GACTCCACTCTCTATGTGTCTTGCTACCGAAAAATGAGCTCGGTAAACATATGAGGGTGAGTCGCGAATTCTCACGTTTT
AAGCGCCCTTTTCTGTTTTA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MAPASTKNDDDTVFTTIPKLPPLNKRPYIQQGTPEFIRVALALFSAGLATFALLYCVQPILPMLSQDFSTSPASSSLSLS
IATGMLALGLMFTGPLSDAIGRKSVMVVALLLAAVCTIVCSFMTSWHGILLMRALTGLSLSGVAAVAMTYLSEEIHPNFI
ALSMGLYISGSSIGGMSGRLVAGVLSDLFSWRVSLLVLGLFALAAACLFWFILPASKHFRASSLRPRTLLINFKLHWRDS
GLPLLFAEGFLIMGGFVTLFNYIGYRLLDGPYYLSPTIVGLLSIVYLTGSYSSPKAGSLSNRYGRGLILLASIGMMLVGV
VITSFPSVIMIFIGMMFVAAGFFAAHSVVSSWVGCRARRAKAQASSLYLFCYYAGSSVAGTLGGVFWLHLGWTGVVVFIT
ALLVIALFIAQRLRKLVGTAKR

Sequences:

>Translated_422_residues
MAPASTKNDDDTVFTTIPKLPPLNKRPYIQQGTPEFIRVALALFSAGLATFALLYCVQPILPMLSQDFSTSPASSSLSLS
IATGMLALGLMFTGPLSDAIGRKSVMVVALLLAAVCTIVCSFMTSWHGILLMRALTGLSLSGVAAVAMTYLSEEIHPNFI
ALSMGLYISGSSIGGMSGRLVAGVLSDLFSWRVSLLVLGLFALAAACLFWFILPASKHFRASSLRPRTLLINFKLHWRDS
GLPLLFAEGFLIMGGFVTLFNYIGYRLLDGPYYLSPTIVGLLSIVYLTGSYSSPKAGSLSNRYGRGLILLASIGMMLVGV
VITSFPSVIMIFIGMMFVAAGFFAAHSVVSSWVGCRARRAKAQASSLYLFCYYAGSSVAGTLGGVFWLHLGWTGVVVFIT
ALLVIALFIAQRLRKLVGTAKR
>Mature_421_residues
APASTKNDDDTVFTTIPKLPPLNKRPYIQQGTPEFIRVALALFSAGLATFALLYCVQPILPMLSQDFSTSPASSSLSLSI
ATGMLALGLMFTGPLSDAIGRKSVMVVALLLAAVCTIVCSFMTSWHGILLMRALTGLSLSGVAAVAMTYLSEEIHPNFIA
LSMGLYISGSSIGGMSGRLVAGVLSDLFSWRVSLLVLGLFALAAACLFWFILPASKHFRASSLRPRTLLINFKLHWRDSG
LPLLFAEGFLIMGGFVTLFNYIGYRLLDGPYYLSPTIVGLLSIVYLTGSYSSPKAGSLSNRYGRGLILLASIGMMLVGVV
ITSFPSVIMIFIGMMFVAAGFFAAHSVVSSWVGCRARRAKAQASSLYLFCYYAGSSVAGTLGGVFWLHLGWTGVVVFITA
LLVIALFIAQRLRKLVGTAKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=414, Percent_Identity=66.6666666666667, Blast_Score=558, Evalue=1e-160,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005829 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 45216; Mature: 45085

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPASTKNDDDTVFTTIPKLPPLNKRPYIQQGTPEFIRVALALFSAGLATFALLYCVQPI
CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPMLSQDFSTSPASSSLSLSIATGMLALGLMFTGPLSDAIGRKSVMVVALLLAAVCTIVC
HHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHH
SFMTSWHGILLMRALTGLSLSGVAAVAMTYLSEEIHPNFIALSMGLYISGSSIGGMSGRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECEEEECCCCCCCCHHH
VAGVLSDLFSWRVSLLVLGLFALAAACLFWFILPASKHFRASSLRPRTLLINFKLHWRDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECC
GLPLLFAEGFLIMGGFVTLFNYIGYRLLDGPYYLSPTIVGLLSIVYLTGSYSSPKAGSLS
CCCEEHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
NRYGRGLILLASIGMMLVGVVITSFPSVIMIFIGMMFVAAGFFAAHSVVSSWVGCRARRA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAQASSLYLFCYYAGSSVAGTLGGVFWLHLGWTGVVVFITALLVIALFIAQRLRKLVGTA
HHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KR
CC
>Mature Secondary Structure 
APASTKNDDDTVFTTIPKLPPLNKRPYIQQGTPEFIRVALALFSAGLATFALLYCVQPI
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPMLSQDFSTSPASSSLSLSIATGMLALGLMFTGPLSDAIGRKSVMVVALLLAAVCTIVC
HHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHH
SFMTSWHGILLMRALTGLSLSGVAAVAMTYLSEEIHPNFIALSMGLYISGSSIGGMSGRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECEEEECCCCCCCCHHH
VAGVLSDLFSWRVSLLVLGLFALAAACLFWFILPASKHFRASSLRPRTLLINFKLHWRDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECC
GLPLLFAEGFLIMGGFVTLFNYIGYRLLDGPYYLSPTIVGLLSIVYLTGSYSSPKAGSLS
CCCEEHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
NRYGRGLILLASIGMMLVGVVITSFPSVIMIFIGMMFVAAGFFAAHSVVSSWVGCRARRA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAQASSLYLFCYYAGSSVAGTLGGVFWLHLGWTGVVVFITALLVIALFIAQRLRKLVGTA
HHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]