| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is 153949357
Identifier: 153949357
GI number: 153949357
Start: 4195489
End: 4197609
Strand: Reverse
Name: 153949357
Synonym: YpsIP31758_3718
Alternate gene names: NA
Gene position: 4197609-4195489 (Counterclockwise)
Preceding gene: 153948477
Following gene: 153949810
Centisome position: 88.87
GC content: 52.52
Gene sequence:
>2121_bases ATGAGCGATAAATATGTGATGGAATCCCTGTTGCGTCCCGCCGTCGAATTGTACACGGCAGCCACGGCGTGGAGCGCCGT TTACATTTGCCTGACGGCACCCTGGGCGGTGGCATTGGCACCGTCTGTTAGTTGGGTGACGGCGGCGGGCTTTAGTGTTT TTGCTTTGAAACGAACCCACCAAGGGCTGCGTATTCTGCGCTACCGGCGCAACATCCGGCGGCTGCCCCGTTATGCAATG AGTAGCCGACACATCCCCATTAGTCACCGATATCTGTTTCTGGGGCGCGGGTTTCAGTGGACACAAAAACACACGCAGCG GCTGCTGGAAGCGCGTCATCCAGAGACCGAACATTATGTGCAGCCATCGGTTATCTATCGTATGGCTCGGGATTTGGAGA AACGTCTGGAATCCCGCTTGCCATGGTTGTGTCGGCTGACGCAGGCCGATACGGGTTTAAATCCGGTAAGACCGCTGCCG CCCGTCGGGGGCAGCCCAATCTATCACGGTGTTGAATTAAATGAACGTGACGTTCTGTATGACTTGGGAGACCGTGTCGG CCACACGCTGGTTATCGGAACCACCCGCGTGGGGAAAACTCGTTTAGCAGAGGTGCTGGTCACGCAAGATATTCGTCGCG GGGACGTGACCGTCATGTTCGATCCTAAAGGGGATGCCGATCTGCTTAAACGTATGTGGGCGGAAACGCGTAGAGCGGGG AGGGAGAATGAGTTTTACGTATTCCATCTGGGCTGGCCAGATATCAGCGCCCGTTACAACGCCATAGGTCGCTTCAGCCG TATCTCTGAAGTCGCTTCACGCGTGGCCGGGCAATTATCCGGTGAAGGTAATTCAGCCGCGTTTCGTGAATTCGCCTGGC GCTTTGTGAACATCATTACCCGCGCATTAGTCGCCCTTGGGCAGCGCCCTGATTACGGGCTCATCCTGCGTTATGTGACC AATATTGGCGAACTTTATGAGACTTATGTAGAAAACCTGCTGACAGTACAAGCCCCTCAGCTCTGGCTGAATGTTCAGAA CGTGATCAGTTCGAACATGCTGAAAGAGCGTGATCTTCCCCGAAATATGCAGGGCCAGGCCAATGCCATGAAAGTGTGGG CGATCGAGACGGTACTCAGCAGTGATGCCGGCAAGAAATTGTGGGATCCAGTGCTGGATGGTCTACGCAGTGCGGTTCGT TATGATCGTACCTATTTTGACAAGATCGTGGCTTCGTTACTGCCACTGTTGGAAAAGCTCACTACCGGTAAAACCGCGGC TCTGCTGGCACCTGATTACAATGATATGAAAGATACGCGGCCAATTTTTGACTGGCAGGAAGTGATCCGTAAAAAGGGGA TTGTGTATGTCGGTCTCGATGCACTGTCTGATCCTGAAGTGGCGTCGGCGGTGGGCAACAGTATGTTTGCTGATCTGGTC TCAGTTGCGGGCCATATCTACAAATTTGGCATCAGTGATGAAATTGGCGCTAAAACGCAGAAGAAAGTGCCGATTAACCT GCATTGCGACGAGTTCAACGAGTTGATGGGGGATGAGTTCATCCCATTAATTAACAAAGGGGGCGGGGCAGGTATCCAGG TGACGGCGTACACTCAGACGCTTTCAGACATTGAAGCGCGAGTGGGCAGTAGTGCTAAAGCGAAGCAGGTTGTTGGTAAT TTCAACTCCCTGATTATGCTAAGGGTACGTGAAAACAGCACCGCCGAACTGCTGACCAGCCAACTGCCGGAAGTTGATGT TTATACTAAAACGCTGGTCTCTGGCGTAACGGATATGGCTAACCCTGAGCAGGATTCTGATTTCACCAGTAATGTACAAG ACCGTGTGAGTAGCATCCGTATGCCCATGGTCACGCCAGCAGATATTATCAACCTGCCCAAAGGTCAGGCGTTTGCACTG CTCGAAGGTGGGCAACTGTGGAAGGTCAGAATGCCTCTTCCTGATGGTAGCAATGATCCGTTGATGCCGGAAAGTATCAG CCGGATAGTCGAATACATGCAGCAGAATTACCGTACTGGGGAAAATTGGTGGTTGGGGAGTGCGCTACCGTCCGATATTT TGGCCGCGTCAGATTTTAGTCAAGGGGACGCTGAAAATTAA
Upstream 100 bases:
>100_bases CATTACCCTTTACTCATCACTGAGAAGGGGCTGACTCAGTAATGTTCATCAGGAGGTTATGTCCTGTCTCCCACCAGGGA GAAGATGATAAGGAGCCGAT
Downstream 100 bases:
>100_bases TGGTTCAGGAGAATACGCCGCCACGACGGAACGTTGAACCACCTAAAAAACCGGGCCTGTTTATGTCTCTGTTCTGGCAT CTGCCGTGGACAATTATCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 706; Mature: 705
Protein sequence:
>706_residues MSDKYVMESLLRPAVELYTAATAWSAVYICLTAPWAVALAPSVSWVTAAGFSVFALKRTHQGLRILRYRRNIRRLPRYAM SSRHIPISHRYLFLGRGFQWTQKHTQRLLEARHPETEHYVQPSVIYRMARDLEKRLESRLPWLCRLTQADTGLNPVRPLP PVGGSPIYHGVELNERDVLYDLGDRVGHTLVIGTTRVGKTRLAEVLVTQDIRRGDVTVMFDPKGDADLLKRMWAETRRAG RENEFYVFHLGWPDISARYNAIGRFSRISEVASRVAGQLSGEGNSAAFREFAWRFVNIITRALVALGQRPDYGLILRYVT NIGELYETYVENLLTVQAPQLWLNVQNVISSNMLKERDLPRNMQGQANAMKVWAIETVLSSDAGKKLWDPVLDGLRSAVR YDRTYFDKIVASLLPLLEKLTTGKTAALLAPDYNDMKDTRPIFDWQEVIRKKGIVYVGLDALSDPEVASAVGNSMFADLV SVAGHIYKFGISDEIGAKTQKKVPINLHCDEFNELMGDEFIPLINKGGGAGIQVTAYTQTLSDIEARVGSSAKAKQVVGN FNSLIMLRVRENSTAELLTSQLPEVDVYTKTLVSGVTDMANPEQDSDFTSNVQDRVSSIRMPMVTPADIINLPKGQAFAL LEGGQLWKVRMPLPDGSNDPLMPESISRIVEYMQQNYRTGENWWLGSALPSDILAASDFSQGDAEN
Sequences:
>Translated_706_residues MSDKYVMESLLRPAVELYTAATAWSAVYICLTAPWAVALAPSVSWVTAAGFSVFALKRTHQGLRILRYRRNIRRLPRYAM SSRHIPISHRYLFLGRGFQWTQKHTQRLLEARHPETEHYVQPSVIYRMARDLEKRLESRLPWLCRLTQADTGLNPVRPLP PVGGSPIYHGVELNERDVLYDLGDRVGHTLVIGTTRVGKTRLAEVLVTQDIRRGDVTVMFDPKGDADLLKRMWAETRRAG RENEFYVFHLGWPDISARYNAIGRFSRISEVASRVAGQLSGEGNSAAFREFAWRFVNIITRALVALGQRPDYGLILRYVT NIGELYETYVENLLTVQAPQLWLNVQNVISSNMLKERDLPRNMQGQANAMKVWAIETVLSSDAGKKLWDPVLDGLRSAVR YDRTYFDKIVASLLPLLEKLTTGKTAALLAPDYNDMKDTRPIFDWQEVIRKKGIVYVGLDALSDPEVASAVGNSMFADLV SVAGHIYKFGISDEIGAKTQKKVPINLHCDEFNELMGDEFIPLINKGGGAGIQVTAYTQTLSDIEARVGSSAKAKQVVGN FNSLIMLRVRENSTAELLTSQLPEVDVYTKTLVSGVTDMANPEQDSDFTSNVQDRVSSIRMPMVTPADIINLPKGQAFAL LEGGQLWKVRMPLPDGSNDPLMPESISRIVEYMQQNYRTGENWWLGSALPSDILAASDFSQGDAEN >Mature_705_residues SDKYVMESLLRPAVELYTAATAWSAVYICLTAPWAVALAPSVSWVTAAGFSVFALKRTHQGLRILRYRRNIRRLPRYAMS SRHIPISHRYLFLGRGFQWTQKHTQRLLEARHPETEHYVQPSVIYRMARDLEKRLESRLPWLCRLTQADTGLNPVRPLPP VGGSPIYHGVELNERDVLYDLGDRVGHTLVIGTTRVGKTRLAEVLVTQDIRRGDVTVMFDPKGDADLLKRMWAETRRAGR ENEFYVFHLGWPDISARYNAIGRFSRISEVASRVAGQLSGEGNSAAFREFAWRFVNIITRALVALGQRPDYGLILRYVTN IGELYETYVENLLTVQAPQLWLNVQNVISSNMLKERDLPRNMQGQANAMKVWAIETVLSSDAGKKLWDPVLDGLRSAVRY DRTYFDKIVASLLPLLEKLTTGKTAALLAPDYNDMKDTRPIFDWQEVIRKKGIVYVGLDALSDPEVASAVGNSMFADLVS VAGHIYKFGISDEIGAKTQKKVPINLHCDEFNELMGDEFIPLINKGGGAGIQVTAYTQTLSDIEARVGSSAKAKQVVGNF NSLIMLRVRENSTAELLTSQLPEVDVYTKTLVSGVTDMANPEQDSDFTSNVQDRVSSIRMPMVTPADIINLPKGQAFALL EGGQLWKVRMPLPDGSNDPLMPESISRIVEYMQQNYRTGENWWLGSALPSDILAASDFSQGDAEN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79160; Mature: 79028
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDKYVMESLLRPAVELYTAATAWSAVYICLTAPWAVALAPSVSWVTAAGFSVFALKRTH CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHCCCCHHHHHCCCHHHHHHHHH QGLRILRYRRNIRRLPRYAMSSRHIPISHRYLFLGRGFQWTQKHTQRLLEARHPETEHYV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHC QPSVIYRMARDLEKRLESRLPWLCRLTQADTGLNPVRPLPPVGGSPIYHGVELNERDVLY CHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHH DLGDRVGHTLVIGTTRVGKTRLAEVLVTQDIRRGDVTVMFDPKGDADLLKRMWAETRRAG HHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC RENEFYVFHLGWPDISARYNAIGRFSRISEVASRVAGQLSGEGNSAAFREFAWRFVNIIT CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH RALVALGQRPDYGLILRYVTNIGELYETYVENLLTVQAPQLWLNVQNVISSNMLKERDLP HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC RNMQGQANAMKVWAIETVLSSDAGKKLWDPVLDGLRSAVRYDRTYFDKIVASLLPLLEKL CCCCCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TTGKTAALLAPDYNDMKDTRPIFDWQEVIRKKGIVYVGLDALSDPEVASAVGNSMFADLV CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHH SVAGHIYKFGISDEIGAKTQKKVPINLHCDEFNELMGDEFIPLINKGGGAGIQVTAYTQT HHHHHHEEECCCCCCCCCCCCCCCEEEEHHHHHHHCCCCCCHHEECCCCCCEEEEEHHHH LSDIEARVGSSAKAKQVVGNFNSLIMLRVRENSTAELLTSQLPEVDVYTKTLVSGVTDMA HHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC NPEQDSDFTSNVQDRVSSIRMPMVTPADIINLPKGQAFALLEGGQLWKVRMPLPDGSNDP CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCC LMPESISRIVEYMQQNYRTGENWWLGSALPSDILAASDFSQGDAEN CCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHCCCCCCCCCC >Mature Secondary Structure SDKYVMESLLRPAVELYTAATAWSAVYICLTAPWAVALAPSVSWVTAAGFSVFALKRTH CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHCCCCHHHHHCCCHHHHHHHHH QGLRILRYRRNIRRLPRYAMSSRHIPISHRYLFLGRGFQWTQKHTQRLLEARHPETEHYV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHC QPSVIYRMARDLEKRLESRLPWLCRLTQADTGLNPVRPLPPVGGSPIYHGVELNERDVLY CHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHH DLGDRVGHTLVIGTTRVGKTRLAEVLVTQDIRRGDVTVMFDPKGDADLLKRMWAETRRAG HHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC RENEFYVFHLGWPDISARYNAIGRFSRISEVASRVAGQLSGEGNSAAFREFAWRFVNIIT CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH RALVALGQRPDYGLILRYVTNIGELYETYVENLLTVQAPQLWLNVQNVISSNMLKERDLP HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC RNMQGQANAMKVWAIETVLSSDAGKKLWDPVLDGLRSAVRYDRTYFDKIVASLLPLLEKL CCCCCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TTGKTAALLAPDYNDMKDTRPIFDWQEVIRKKGIVYVGLDALSDPEVASAVGNSMFADLV CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHH SVAGHIYKFGISDEIGAKTQKKVPINLHCDEFNELMGDEFIPLINKGGGAGIQVTAYTQT HHHHHHEEECCCCCCCCCCCCCCCEEEEHHHHHHHCCCCCCHHEECCCCCCEEEEEHHHH LSDIEARVGSSAKAKQVVGNFNSLIMLRVRENSTAELLTSQLPEVDVYTKTLVSGVTDMA HHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC NPEQDSDFTSNVQDRVSSIRMPMVTPADIINLPKGQAFALLEGGQLWKVRMPLPDGSNDP CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCC LMPESISRIVEYMQQNYRTGENWWLGSALPSDILAASDFSQGDAEN CCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA