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The map label for this gene is traC [H]

Identifier: 153949355

GI number: 153949355

Start: 1072293

End: 1074584

Strand: Reverse

Name: traC [H]

Synonym: YpsIP31758_0890

Alternate gene names: 153949355

Gene position: 1074584-1072293 (Counterclockwise)

Preceding gene: 153949565

Following gene: 153950888

Centisome position: 22.75

GC content: 55.06

Gene sequence:

>2292_bases
ATGAATCAATTTATTACCGAGGTTGCGGCACAGGCGCGCGGAAAATGGGGCTTTATTCTGGATGCGCTGGCGATCAGCCA
CAGCAAACAGCACTCCCCCTGTCCGGCCTGTGGCGGCAAAGACCGCTTTCGTTTTGATGACCGTCAGGGCGCGGGAACGT
GGTTTTGTAATCAGTGCGAACCACAATCCGGCGACGGTTTGGATCTGGTTAAAAATGTCCGACAATGCTCGCTAACTGAA
GCCGCGCAGCTGGTGGCCGATATTCTCGGTGTCTCACCCAAATCTAAAGCGCCGGATCTGGCCTCTCTCATGGCGAAAAC
CACGCCAGGGGAATCTCGCTATTTAATTAATAAAGGTCTGAACAGCCATAAATTACCTATTCTGCCGGATGGTTCGTTAT
TGCTGATATTGCAGAATATGGCGGGGGACTGCACCGGCGCACAGATTATCCGGCCCGATGGCACGAAAAAGCTGATCGCC
GGTAGCCGCAAAAAAGGCGCGTTTATCCCGCTCAAACCGCTGCCGGAACAGGCTGAAACCGTGGTGCTGGCAGAGGGTTA
CGCCACCGCGCAAAGTCTGGAGTTATTGCTACCGGCCGCCGTGATTATCGCCGCCATCGATGCCGGAAATCTGTTGCCGG
TGGCACAGGCATTCCGTATCTATTGGCCTGCCGCGAAAATCATCATTGCGGCGGATAATGATATCAATCCACAAGACACA
GCCAATGTTGGCCAGTTGTCCGCAGAAAAAGCCGCCAACGCGGTCAATGGTTGGGTGACATTGCCGCCAACCCCGCATAA
AGCCGATTGGGATGATTACCGTCAGCAAGCCGGTACCGGGCAGGCGCGTAACAGTTTTTATCATGGTTTGTATCAGCCGC
CGCCGGTGAGCCAATTGGCTGAAAACAAAGGGTTGCATCCGACATTATCGCAAATGGCCGCCAGTCAGCGCGGGCAGTTA
TTGGCCGAACATTATGGCCAGATTGCGGTGCATGCCGAGAGTGAAACGGTTTATCACTATGATGGCGAGCGCTGGGACAA
GCTGCCCGATGGTGTGTTACGGCGCGAGCTGGTGATGATTTTCAACGCCAACGACACGCCCTATTCACCGGCCGGTATCC
GCAATGCCATTGAAGCGATGAAGCTGCAAATCCCGATCATGGGCGAGCCACCACGCCATTTAATCGGCTTTCAGAATGGA
GTTTATGACCTGAAAGCCAAACAGTTCCGGCCGCATCGCGCCAATGATTGGTTGCAGCATCATAACGACATCATATTCAC
CGAACCGCAGCCAGACGAAAATCTGGCACACCACGCCCCCCATTTCACCAAGTGGCTGGCCCATGCGGCCAATGACGAAT
TGCCCAAAATGGCCCGTATCAAAGCCGCGCTGTTTATGATTCTGTCCAACCGATTCGACTGGCAATTGTTCCTTGAGGTC
ACCGGCGAGGGCGGCAGTGGAAAATCGGTATTCACCTACATCGCCACCTTGCTGGCGGGCCGCCAGAACACCGCCTCCGG
CAATATGGCGGCGCTGGATCAAGCCAGAGGGCGCGCGCAGTTTGTCGGCAAGAGCCTGATTACGCTGCCCGATCAGGTGA
AATATGTCGGCGAGGGGGCTGGCATCAAGGCCATCACCGGCGGGGATTTAGTGGAAATCGACGGCAAATATGAGAAACAA
TTCAGCACCTTATTAACGGCTGTGGTGCTGGCGACCAATAACGAGCCGATGAGTTTCACCGAGCGGCAAGGCGGTATTGC
CCGGCGGCGGGTGATTTTCGCGTTCAACCATCCCGTGAAAGAGGCGGATAAAGATCCGCTGATCGGCGAGAAAATCGCGG
CAGAACTGCCAGTGGTGATCCGCTGCCTGCTGGCTGAATTTGCCGACCAGGACAAGGCGCGAAAGTTGCTACTTGAGCAG
CGAGATTCACGGGAGGCTATGGGGGTTAAGCGGGATGCCGATCCGCTTTATGGCTTCTGCGCGCACATTGTCGAGCTGGG
CGAGGCGGTCGGTATGTATATGGGAACGCTGGCAATTTCCCCGCGCGCCCCGCGCATTTATCTGTATCACGCTTATCTGG
CTTATATGGAGGCTTACGGCCATCAGCGTTCATTATCGTTGACCAAATTCGGCAAAGACTTTCCCAAAGTGATGAAAGAG
TTCGGCGCAGAATACAAAAAAGCCAGAACTGACAAAGGGTTCCGCTACAACATGGATTTATCCGACACCGCCAATGACTG
GCTCCCCGCTCTGGCACTGCCCCACCATCCGCAACCGGAAGAACCCCACTAA

Upstream 100 bases:

>100_bases
ATAAATTGTATTTATAAAATTTAAAACATTGCTATGGGTGTTAAAAATGGCCCGAAAATGGATTTTATCCGCCGGAAACC
GGGCGTAAAAAGGAAAAGTC

Downstream 100 bases:

>100_bases
TTATTTCTCACCTCTGGCTTATTCAGAGTATTCAGAAATAGATTTAATTAATTGAAATACAAAGATAAAAACTGACTGAA
TAGTTTACTAATAACTGTTC

Product: D5 family nucleoside triphosphatase

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 763; Mature: 763

Protein sequence:

>763_residues
MNQFITEVAAQARGKWGFILDALAISHSKQHSPCPACGGKDRFRFDDRQGAGTWFCNQCEPQSGDGLDLVKNVRQCSLTE
AAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGLNSHKLPILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIA
GSRKKGAFIPLKPLPEQAETVVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDT
ANVGQLSAEKAANAVNGWVTLPPTPHKADWDDYRQQAGTGQARNSFYHGLYQPPPVSQLAENKGLHPTLSQMAASQRGQL
LAEHYGQIAVHAESETVYHYDGERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPPRHLIGFQNG
VYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWLAHAANDELPKMARIKAALFMILSNRFDWQLFLEV
TGEGGSGKSVFTYIATLLAGRQNTASGNMAALDQARGRAQFVGKSLITLPDQVKYVGEGAGIKAITGGDLVEIDGKYEKQ
FSTLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAAELPVVIRCLLAEFADQDKARKLLLEQ
RDSREAMGVKRDADPLYGFCAHIVELGEAVGMYMGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKE
FGAEYKKARTDKGFRYNMDLSDTANDWLPALALPHHPQPEEPH

Sequences:

>Translated_763_residues
MNQFITEVAAQARGKWGFILDALAISHSKQHSPCPACGGKDRFRFDDRQGAGTWFCNQCEPQSGDGLDLVKNVRQCSLTE
AAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGLNSHKLPILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIA
GSRKKGAFIPLKPLPEQAETVVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDT
ANVGQLSAEKAANAVNGWVTLPPTPHKADWDDYRQQAGTGQARNSFYHGLYQPPPVSQLAENKGLHPTLSQMAASQRGQL
LAEHYGQIAVHAESETVYHYDGERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPPRHLIGFQNG
VYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWLAHAANDELPKMARIKAALFMILSNRFDWQLFLEV
TGEGGSGKSVFTYIATLLAGRQNTASGNMAALDQARGRAQFVGKSLITLPDQVKYVGEGAGIKAITGGDLVEIDGKYEKQ
FSTLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAAELPVVIRCLLAEFADQDKARKLLLEQ
RDSREAMGVKRDADPLYGFCAHIVELGEAVGMYMGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKE
FGAEYKKARTDKGFRYNMDLSDTANDWLPALALPHHPQPEEPH
>Mature_763_residues
MNQFITEVAAQARGKWGFILDALAISHSKQHSPCPACGGKDRFRFDDRQGAGTWFCNQCEPQSGDGLDLVKNVRQCSLTE
AAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGLNSHKLPILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIA
GSRKKGAFIPLKPLPEQAETVVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDT
ANVGQLSAEKAANAVNGWVTLPPTPHKADWDDYRQQAGTGQARNSFYHGLYQPPPVSQLAENKGLHPTLSQMAASQRGQL
LAEHYGQIAVHAESETVYHYDGERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPPRHLIGFQNG
VYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWLAHAANDELPKMARIKAALFMILSNRFDWQLFLEV
TGEGGSGKSVFTYIATLLAGRQNTASGNMAALDQARGRAQFVGKSLITLPDQVKYVGEGAGIKAITGGDLVEIDGKYEKQ
FSTLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAAELPVVIRCLLAEFADQDKARKLLLEQ
RDSREAMGVKRDADPLYGFCAHIVELGEAVGMYMGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKE
FGAEYKKARTDKGFRYNMDLSDTANDWLPALALPHHPQPEEPH

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG3378

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 83950; Mature: 83950

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQFITEVAAQARGKWGFILDALAISHSKQHSPCPACGGKDRFRFDDRQGAGTWFCNQCE
CCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCEEECCCC
PQSGDGLDLVKNVRQCSLTEAAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEHEECCC
NSHKLPILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIAGSRKKGAFIPLKPLPEQAET
CCCCCCCCCCCCEEEEEEHHCCCCCCCEEECCCCCHHHHCCCCCCCCEECCCCCCCCCCE
VVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDT
EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEECEEEEEEEECCCCCCCCC
ANVGQLSAEKAANAVNGWVTLPPTPHKADWDDYRQQAGTGQARNSFYHGLYQPPPVSQLA
CCHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHH
ENKGLHPTLSQMAASQRGQLLAEHYGQIAVHAESETVYHYDGERWDKLPDGVLRRELVMI
HCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHCCCHHHHHEEEEEE
FNANDTPYSPAGIRNAIEAMKLQIPIMGEPPRHLIGFQNGVYDLKAKQFRPHRANDWLQH
ECCCCCCCCCHHHHHHHHHHEEEEECCCCCCHHHHCCCCCEEECCHHHCCCCCHHHHHHH
HNDIIFTEPQPDENLAHHAPHFTKWLAHAANDELPKMARIKAALFMILSNRFDWQLFLEV
CCCEEEECCCCCCCHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
TGEGGSGKSVFTYIATLLAGRQNTASGNMAALDQARGRAQFVGKSLITLPDQVKYVGEGA
ECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCHHHCCCHHHHEECCCC
GIKAITGGDLVEIDGKYEKQFSTLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVK
CEEEECCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCHH
EADKDPLIGEKIAAELPVVIRCLLAEFADQDKARKLLLEQRDSREAMGVKRDADPLYGFC
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHH
AHIVELGEAVGMYMGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKE
HHHHHHHHHHHHHHHHEEECCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHH
FGAEYKKARTDKGFRYNMDLSDTANDWLPALALPHHPQPEEPH
HHHHHHHHHCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNQFITEVAAQARGKWGFILDALAISHSKQHSPCPACGGKDRFRFDDRQGAGTWFCNQCE
CCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCEEECCCC
PQSGDGLDLVKNVRQCSLTEAAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEHEECCC
NSHKLPILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIAGSRKKGAFIPLKPLPEQAET
CCCCCCCCCCCCEEEEEEHHCCCCCCCEEECCCCCHHHHCCCCCCCCEECCCCCCCCCCE
VVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDT
EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEECEEEEEEEECCCCCCCCC
ANVGQLSAEKAANAVNGWVTLPPTPHKADWDDYRQQAGTGQARNSFYHGLYQPPPVSQLA
CCHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHH
ENKGLHPTLSQMAASQRGQLLAEHYGQIAVHAESETVYHYDGERWDKLPDGVLRRELVMI
HCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHCCCHHHHHEEEEEE
FNANDTPYSPAGIRNAIEAMKLQIPIMGEPPRHLIGFQNGVYDLKAKQFRPHRANDWLQH
ECCCCCCCCCHHHHHHHHHHEEEEECCCCCCHHHHCCCCCEEECCHHHCCCCCHHHHHHH
HNDIIFTEPQPDENLAHHAPHFTKWLAHAANDELPKMARIKAALFMILSNRFDWQLFLEV
CCCEEEECCCCCCCHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
TGEGGSGKSVFTYIATLLAGRQNTASGNMAALDQARGRAQFVGKSLITLPDQVKYVGEGA
ECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCHHHCCCHHHHEECCCC
GIKAITGGDLVEIDGKYEKQFSTLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVK
CEEEECCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCHH
EADKDPLIGEKIAAELPVVIRCLLAEFADQDKARKLLLEQRDSREAMGVKRDADPLYGFC
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHH
AHIVELGEAVGMYMGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKE
HHHHHHHHHHHHHHHHEEECCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHH
FGAEYKKARTDKGFRYNMDLSDTANDWLPALALPHHPQPEEPH
HHHHHHHHHCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]