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The map label for this gene is csgA [H]

Identifier: 153949352

GI number: 153949352

Start: 3520617

End: 3521297

Strand: Reverse

Name: csgA [H]

Synonym: YpsIP31758_3129

Alternate gene names: 153949352

Gene position: 3521297-3520617 (Counterclockwise)

Preceding gene: 153948761

Following gene: 153947233

Centisome position: 74.55

GC content: 50.22

Gene sequence:

>681_bases
ATGGGCACAGCGAAAAGAACAGCATTGGTTATCGGTGCTTCACGGGGGTTAGGGCTAGGGTTGGTTGATGAGCTTAGTCG
CCGCGGATGGTCTGTCACCGCGACCACACGTGGCGCGGCTCAAGATACGTCAGCACATGCCGCCCATTGGTTAAAATTAG
ATATTAATCAGCCAGAAAGCATTAAGCAGTTCTTACTACAAGTACAGGGGCAGCGATTCGACCTGATATTTGTTAACGCC
GGAATCTCTGGGCCAGCACACCAATCTGCGATCGATGCCACACCCGATGAAATCCAGGAACTGTTCCAGACTAACGCCAT
CTCGCCTATCCGAATTGCTCAACATTTGCTGGCACAACGCAATCCAACCCAGAGCGTATTGGCGTTTATGTCTTCCCAGT
TAGGCAGTATTGAACGCAATGTTTCTGGGCATAAACCGTTGTATTCAGCCAGTAAAGCCGCATTGAATATGATGACGCGT
AATCTGGTGGCTGAAGTTGCAGATCCGACCTTGACGGTATTATCAATTCATCCCGGTTGGGTGAAAACGGATATGGGCGG
TGATGCGGCACCGTTGACGATTACTACCAGTGTGAAGGGCGTGGTCGATCAAATCGAACAGGCTTCAGGGAAAGGGGGCC
ACGGATTTATTGACTATCAGGGGCATTCATTACCGTGGTAA

Upstream 100 bases:

>100_bases
TCAGTGATAACTGAGCTGTTTTTTCGCTCCAGTAAGATAATATTTATAGGGATAAGAGAATATTTATAGCGCGAATAACA
CTCACTGAAAGGAGCATGAT

Downstream 100 bases:

>100_bases
TGCTCTTTGTTCACCATTAATACGCTCCACTCTAATGAATATCCCCCATCAATAGTTCGATAGGGGATAATATTTTCAGA
TACTTCGCCGCCGATGGCTT

Product: short chain dehydrogenase

Products: (3R)-hydroxyacyl-[acyl-carrier-protein]; NADP; NADPH; Proton; beta-ketoacyl-ACP [C]

Alternate protein names: C signal [H]

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MGTAKRTALVIGASRGLGLGLVDELSRRGWSVTATTRGAAQDTSAHAAHWLKLDINQPESIKQFLLQVQGQRFDLIFVNA
GISGPAHQSAIDATPDEIQELFQTNAISPIRIAQHLLAQRNPTQSVLAFMSSQLGSIERNVSGHKPLYSASKAALNMMTR
NLVAEVADPTLTVLSIHPGWVKTDMGGDAAPLTITTSVKGVVDQIEQASGKGGHGFIDYQGHSLPW

Sequences:

>Translated_226_residues
MGTAKRTALVIGASRGLGLGLVDELSRRGWSVTATTRGAAQDTSAHAAHWLKLDINQPESIKQFLLQVQGQRFDLIFVNA
GISGPAHQSAIDATPDEIQELFQTNAISPIRIAQHLLAQRNPTQSVLAFMSSQLGSIERNVSGHKPLYSASKAALNMMTR
NLVAEVADPTLTVLSIHPGWVKTDMGGDAAPLTITTSVKGVVDQIEQASGKGGHGFIDYQGHSLPW
>Mature_225_residues
GTAKRTALVIGASRGLGLGLVDELSRRGWSVTATTRGAAQDTSAHAAHWLKLDINQPESIKQFLLQVQGQRFDLIFVNAG
ISGPAHQSAIDATPDEIQELFQTNAISPIRIAQHLLAQRNPTQSVLAFMSSQLGSIERNVSGHKPLYSASKAALNMMTRN
LVAEVADPTLTVLSIHPGWVKTDMGGDAAPLTITTSVKGVVDQIEQASGKGGHGFIDYQGHSLPW

Specific function: Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YKL071W [H]

Homologues:

Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=29.2553191489362, Blast_Score=70, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17558994, Length=231, Percent_Identity=30.3030303030303, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17558990, Length=250, Percent_Identity=28.8, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17559962, Length=228, Percent_Identity=31.140350877193, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17532177, Length=247, Percent_Identity=26.7206477732794, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193207563, Length=228, Percent_Identity=27.1929824561404, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17541382, Length=258, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17559964, Length=227, Percent_Identity=29.9559471365639, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17558996, Length=251, Percent_Identity=27.0916334661355, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17558992, Length=228, Percent_Identity=28.0701754385965, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322779, Length=204, Percent_Identity=31.8627450980392, Blast_Score=74, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322067, Length=202, Percent_Identity=29.7029702970297, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24640547, Length=244, Percent_Identity=32.7868852459016, Blast_Score=118, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100 [C]

Molecular weight: Translated: 24125; Mature: 23993

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTAKRTALVIGASRGLGLGLVDELSRRGWSVTATTRGAAQDTSAHAAHWLKLDINQPES
CCCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEECCCCHH
IKQFLLQVQGQRFDLIFVNAGISGPAHQSAIDATPDEIQELFQTNAISPIRIAQHLLAQR
HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC
NPTQSVLAFMSSQLGSIERNVSGHKPLYSASKAALNMMTRNLVAEVADPTLTVLSIHPGW
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCE
VKTDMGGDAAPLTITTSVKGVVDQIEQASGKGGHGFIDYQGHSLPW
EEECCCCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
GTAKRTALVIGASRGLGLGLVDELSRRGWSVTATTRGAAQDTSAHAAHWLKLDINQPES
CCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEECCCCHH
IKQFLLQVQGQRFDLIFVNAGISGPAHQSAIDATPDEIQELFQTNAISPIRIAQHLLAQR
HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC
NPTQSVLAFMSSQLGSIERNVSGHKPLYSASKAALNMMTRNLVAEVADPTLTVLSIHPGW
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCE
VKTDMGGDAAPLTITTSVKGVVDQIEQASGKGGHGFIDYQGHSLPW
EEECCCCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NADPH [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Oxoacyl-[acyl-carrier-protein]; NADPH; D-3-hydroxy-acyl-ACP; NADP [C]

Specific reaction: Oxoacyl-[acyl-carrier-protein] + NADPH = (3R)-hydroxyacyl-[acyl-carrier-protein] + NADP+ D-3-hydroxy-acyl-ACP + NADP = NADPH + Proton + beta-ketoacyl-ACP [C]

General reaction: Redox reaction [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152896; 2107980; 2118510; 1372277 [H]