Click here to switch to the map view.

The map label for this gene is rfaQ [H]

Identifier: 153949339

GI number: 153949339

Start: 3970231

End: 3971394

Strand: Reverse

Name: rfaQ [H]

Synonym: YpsIP31758_3516

Alternate gene names: 153949339

Gene position: 3971394-3970231 (Counterclockwise)

Preceding gene: 153948237

Following gene: 153948395

Centisome position: 84.08

GC content: 47.08

Gene sequence:

>1164_bases
ATGATAAATACATCAAATAAGACAGCATCACCTGCCGGGCAACTTTCTGCTCCCGCTTCTCAAACCGGTGCCAGCCACTT
GCCGGAAGTACTGCGGAATAAAGAGCATGTTGCGCGCATTTTAGTGATTAAGTTACGGCATTTCGGCGATGTTCTACTGA
CGACGCCGCTACTGAGTACGCTGAAAGCCAATTATCCGCAGGCTAAAATCGATGTACTGCTGTATGGCGGTACGCAGGAT
ATGTTGCGTGAAAACAAGGCGATCAATCATGCCTTTATTGTTGATCGGGGCCTGAAGCATGCAGGATTAAAGGCGCAAAT
CAGTGGCGAAAAAGCACTGTTTAGCGCCCTAAAAAAACAACATTATGATTTGATTCTTAATTTATCCGATCAATGGCGGG
CTGCGGCGTATTGCCGTTTGTTAAAACCCACGTTTAGTATCGGTTTCCACTACCCGAAACGGGATACCTGGCTCTGGCGT
TACTGCCATTCCACATTGGTTGAGATCCCTAATGCTGCAGAACGGCACACGGTACTCAATAATCTGGATATTCTCTCACC
ACTACAACTGACCGACATCAGGACCGACGTCACCATGTCCTATGGGCTGCATGATATCGAGCGGGCAAAGCAGTTGTGCC
AACAGCATAATATTGAACACTATATTTTGATTCAGCCTTCCGCCCGCTGGAAATTCAAAACCTGGGCCAGCGAATCCTTC
AGTGAATTGATCAACCACCTCACTCAACAAGGTGAAACTGTTCTGCTGACGGGCAGTAAAGATCAGGCTGAATTGGATTA
CATCGCTGAGATTATTGCTGGCTGCACACAACCGGAAAAGGTGATCAATTTATCGGGTCAATTGGCATTGCCTGAACTGG
CGGTCTTAATTGATAACGCCAAATTATTTATTGGTGTTGATTCTGTGGCAATGCATATGGCTGCTGCGTTACAGACGCCA
GCAGTGGTACTATTTGGCCCGAGTAATCTTAATCAATGGCACCCGTGGCAGGCTCCACATACTTTACTCTGGGCTGGCAA
TTACCGCACTTTGCCGCATCCCAATGAAATAGATACTGACACTACTGATCGCTATCTGAACGCAATCCCAGTTAGTGATG
TCATAGACGCAGTTGATTCCTGGCGAGTTGCCAAAGGGAATTAG

Upstream 100 bases:

>100_bases
TATTCATATGCTAAAACGATTGCCATGCTGCAAACCCCTGATATAGCATAATTGCCCTCTTTCGTTGCCAATGATGGCGC
ATCCTCTGATGGCGCATCCC

Downstream 100 bases:

>100_bases
TGGGTCAGTCGCTTTATTTTTCCTAACCAGCTCGAGCTGAGAAAATTATGACAACTTTATCACCGGCAATTCCGGTCAAT
CGCCGTAGTGAAATGCTGTG

Product: lipopolysaccharide heptosyltransferase III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MINTSNKTASPAGQLSAPASQTGASHLPEVLRNKEHVARILVIKLRHFGDVLLTTPLLSTLKANYPQAKIDVLLYGGTQD
MLRENKAINHAFIVDRGLKHAGLKAQISGEKALFSALKKQHYDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDTWLWR
YCHSTLVEIPNAAERHTVLNNLDILSPLQLTDIRTDVTMSYGLHDIERAKQLCQQHNIEHYILIQPSARWKFKTWASESF
SELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKVINLSGQLALPELAVLIDNAKLFIGVDSVAMHMAAALQTP
AVVLFGPSNLNQWHPWQAPHTLLWAGNYRTLPHPNEIDTDTTDRYLNAIPVSDVIDAVDSWRVAKGN

Sequences:

>Translated_387_residues
MINTSNKTASPAGQLSAPASQTGASHLPEVLRNKEHVARILVIKLRHFGDVLLTTPLLSTLKANYPQAKIDVLLYGGTQD
MLRENKAINHAFIVDRGLKHAGLKAQISGEKALFSALKKQHYDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDTWLWR
YCHSTLVEIPNAAERHTVLNNLDILSPLQLTDIRTDVTMSYGLHDIERAKQLCQQHNIEHYILIQPSARWKFKTWASESF
SELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKVINLSGQLALPELAVLIDNAKLFIGVDSVAMHMAAALQTP
AVVLFGPSNLNQWHPWQAPHTLLWAGNYRTLPHPNEIDTDTTDRYLNAIPVSDVIDAVDSWRVAKGN
>Mature_387_residues
MINTSNKTASPAGQLSAPASQTGASHLPEVLRNKEHVARILVIKLRHFGDVLLTTPLLSTLKANYPQAKIDVLLYGGTQD
MLRENKAINHAFIVDRGLKHAGLKAQISGEKALFSALKKQHYDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDTWLWR
YCHSTLVEIPNAAERHTVLNNLDILSPLQLTDIRTDVTMSYGLHDIERAKQLCQQHNIEHYILIQPSARWKFKTWASESF
SELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKVINLSGQLALPELAVLIDNAKLFIGVDSVAMHMAAALQTP
AVVLFGPSNLNQWHPWQAPHTLLWAGNYRTLPHPNEIDTDTTDRYLNAIPVSDVIDAVDSWRVAKGN

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=337, Percent_Identity=40.3560830860534, Blast_Score=238, Evalue=7e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 43290; Mature: 43290

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINTSNKTASPAGQLSAPASQTGASHLPEVLRNKEHVARILVIKLRHFGDVLLTTPLLST
CCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHHHHH
LKANYPQAKIDVLLYGGTQDMLRENKAINHAFIVDRGLKHAGLKAQISGEKALFSALKKQ
HHCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHC
HYDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDTWLWRYCHSTLVEIPNAAERHTVLN
CCEEEEECCHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
NLDILSPLQLTDIRTDVTMSYGLHDIERAKQLCQQHNIEHYILIQPSARWKFKTWASESF
CCCCCCCCCHHHCCCCEEHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHH
SELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKVINLSGQLALPELAVLIDNA
HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEEEECC
KLFIGVDSVAMHMAAALQTPAVVLFGPSNLNQWHPWQAPHTLLWAGNYRTLPHPNEIDTD
EEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
TTDRYLNAIPVSDVIDAVDSWRVAKGN
CHHHHHHCCCHHHHHHHHHCCEECCCC
>Mature Secondary Structure
MINTSNKTASPAGQLSAPASQTGASHLPEVLRNKEHVARILVIKLRHFGDVLLTTPLLST
CCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHHHHH
LKANYPQAKIDVLLYGGTQDMLRENKAINHAFIVDRGLKHAGLKAQISGEKALFSALKKQ
HHCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHC
HYDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDTWLWRYCHSTLVEIPNAAERHTVLN
CCEEEEECCHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
NLDILSPLQLTDIRTDVTMSYGLHDIERAKQLCQQHNIEHYILIQPSARWKFKTWASESF
CCCCCCCCCHHHCCCCEEHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHH
SELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKVINLSGQLALPELAVLIDNA
HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEEEECC
KLFIGVDSVAMHMAAALQTPAVVLFGPSNLNQWHPWQAPHTLLWAGNYRTLPHPNEIDTD
EEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
TTDRYLNAIPVSDVIDAVDSWRVAKGN
CHHHHHHCCCHHHHHHHHHCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1732225; 1447141; 8041620; 9278503 [H]