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The map label for this gene is crl

Identifier: 153949226

GI number: 153949226

Start: 3545971

End: 3546372

Strand: Reverse

Name: crl

Synonym: YpsIP31758_3151

Alternate gene names: 153949226

Gene position: 3546372-3545971 (Counterclockwise)

Preceding gene: 153949820

Following gene: 153950764

Centisome position: 75.08

GC content: 44.53

Gene sequence:

>402_bases
ATGACGTTAACCAGTGCTCATCCTAAAAGTAAGCTTATGAAACGTTTTGCAGCTTTGGGGCCATACCTGCGAGAAGGGCA
GTGCCAGAACGACCATTTTTTCTTTGATTGTTTAGCTGTATGCATCAATGTGAAGCTTGCCCCAGAGAAACGTGAGTTCT
GGGGGTGGTGGATAGAACAGGAGCCATCGGCTGGTCGCTTTACTTATGTTTATCAACTCGGACTCTTTAATAAAGAAGGC
AACTGGAACGCGGAAAAAATTAGCGATCCTGAAGTTCAGGATAAACTTGAAAGCACACTGCGTAGTTTTCATCTGCGGCT
CGAAGAGATGCTAGCCTCCATTGACATGAAATTAGAACCTGCTGCGGATTTTAACGATCAGCCTGTTAAGTTATCTGCTT
GA

Upstream 100 bases:

>100_bases
TATTGCAAACCAGCGAATGGTTAGAAGATAAAATGCGTTAATGAGTTGCTAAATTTTAATAGTTTGCTAAAAAGGTTCGT
CTACATAAGGAGATTTAAGT

Downstream 100 bases:

>100_bases
TAATACGCTTACCTAGGTTTGATTAGGCCAATTCCGTGGTCATAAACTGTCCCCATTACCCCCTTTCTGCACAATAAAGG
GGGTGATTTCGTATCAAGCC

Product: Crl family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MTLTSAHPKSKLMKRFAALGPYLREGQCQNDHFFFDCLAVCINVKLAPEKREFWGWWIEQEPSAGRFTYVYQLGLFNKEG
NWNAEKISDPEVQDKLESTLRSFHLRLEEMLASIDMKLEPAADFNDQPVKLSA

Sequences:

>Translated_133_residues
MTLTSAHPKSKLMKRFAALGPYLREGQCQNDHFFFDCLAVCINVKLAPEKREFWGWWIEQEPSAGRFTYVYQLGLFNKEG
NWNAEKISDPEVQDKLESTLRSFHLRLEEMLASIDMKLEPAADFNDQPVKLSA
>Mature_132_residues
TLTSAHPKSKLMKRFAALGPYLREGQCQNDHFFFDCLAVCINVKLAPEKREFWGWWIEQEPSAGRFTYVYQLGLFNKEGN
WNAEKISDPEVQDKLESTLRSFHLRLEEMLASIDMKLEPAADFNDQPVKLSA

Specific function: Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the crl family

Homologues:

Organism=Escherichia coli, GI1786435, Length=133, Percent_Identity=61.6541353383459, Blast_Score=189, Evalue=7e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CRL_YERP3 (A7FLI3)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001402111.1
- STRING:   A7FLI3
- GeneID:   5385851
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_3151
- NMPDR:   fig|349747.3.peg.3556
- eggNOG:   NOG06255
- HOGENOM:   HBG644153
- OMA:   PYIREEQ
- ProtClustDB:   PRK10984
- BioCyc:   YPSE349747:YPSIP31758_3151-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01178
- InterPro:   IPR009986

Pfam domain/function: PF07417 Crl

EC number: NA

Molecular weight: Translated: 15401; Mature: 15270

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTSAHPKSKLMKRFAALGPYLREGQCQNDHFFFDCLAVCINVKLAPEKREFWGWWIEQ
CCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEC
EPSAGRFTYVYQLGLFNKEGNWNAEKISDPEVQDKLESTLRSFHLRLEEMLASIDMKLEP
CCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AADFNDQPVKLSA
CCCCCCCCEEECC
>Mature Secondary Structure 
TLTSAHPKSKLMKRFAALGPYLREGQCQNDHFFFDCLAVCINVKLAPEKREFWGWWIEQ
CCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEC
EPSAGRFTYVYQLGLFNKEGNWNAEKISDPEVQDKLESTLRSFHLRLEEMLASIDMKLEP
CCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AADFNDQPVKLSA
CCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA