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The map label for this gene is deoC2 [H]

Identifier: 153949191

GI number: 153949191

Start: 3006500

End: 3007171

Strand: Direct

Name: deoC2 [H]

Synonym: YpsIP31758_2652

Alternate gene names: 153949191

Gene position: 3006500-3007171 (Clockwise)

Preceding gene: 153949645

Following gene: 153949307

Centisome position: 63.65

GC content: 47.62

Gene sequence:

>672_bases
ATGACTACCAATTACGCTCATTATATTGATCACACTCTACTGGCGATGGATGCCACCGAAGCGCAAATCATTAAACTGTG
CGAAGAAGCTAAACAACACCATTTCTATGCTGTATGTGTTAACTCTGGATACGTTCCTGTGGCTGCCCAGCAATTAGCCG
GGAGTTCAGTCAAAGTCTGCTCAGTCATTGGTTTCCCTCTGGGTGCAGGTCTGACTGCAGCAAAAGCTTTTGAAGCTCAA
GCCGCGATCAATGCAGGTGCACAAGAGATTGATATGGTTATCAATGTTGGCTGGCTGAAAAGTGGTAAAATTGCCGACGT
CAAAGCGGATATTAAGGCCGTGCGGGACAATTGCGCCGCTACACCGTTGAAGGTAATATTAGAAACTTGCCTGCTCAGCG
ATGAACAAATTGTACAAGTTTGCAAAATGTGTCGTGAACTTGACGTTGCTTTTGTTAAAACATCAACCGGTTTTAGTACC
GGTGGCGCTAAAGAAGAACACGTCAAATTGATGCGTGCAACGGTTGGCCCGGTTATGGGGGTTAAAGCCTCTGGTGCTGT
TCGTGACAGAGCAACCGCCGAAACCATGATCCAGGCAGGTGCTACGCGAATTGGTACCAGCTCTGGAGTTGCCATTGTTT
CAGGTCAACAAGCCGCCGCATCAGGTTACTAG

Upstream 100 bases:

>100_bases
TTTAAATAACAAAATTCATGAATTCACGGTGTGTCGCTCCTTTTTACTCATCAAAATGTTATGATTATCACAATTACCAA
TAAGCTCAAGGATCCTAATC

Downstream 100 bases:

>100_bases
AATGTACTGACCGTGGTTGAAAAATCTATAAGCGTGATTGAAGAATATATAAAAGATTGACTGCACCTTGGGGTGCTCCG
GTGGTTTACGTCACGACGCC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase 1; DERA 1; Deoxyriboaldolase 1 [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTTNYAHYIDHTLLAMDATEAQIIKLCEEAKQHHFYAVCVNSGYVPVAAQQLAGSSVKVCSVIGFPLGAGLTAAKAFEAQ
AAINAGAQEIDMVINVGWLKSGKIADVKADIKAVRDNCAATPLKVILETCLLSDEQIVQVCKMCRELDVAFVKTSTGFST
GGAKEEHVKLMRATVGPVMGVKASGAVRDRATAETMIQAGATRIGTSSGVAIVSGQQAAASGY

Sequences:

>Translated_223_residues
MTTNYAHYIDHTLLAMDATEAQIIKLCEEAKQHHFYAVCVNSGYVPVAAQQLAGSSVKVCSVIGFPLGAGLTAAKAFEAQ
AAINAGAQEIDMVINVGWLKSGKIADVKADIKAVRDNCAATPLKVILETCLLSDEQIVQVCKMCRELDVAFVKTSTGFST
GGAKEEHVKLMRATVGPVMGVKASGAVRDRATAETMIQAGATRIGTSSGVAIVSGQQAAASGY
>Mature_222_residues
TTNYAHYIDHTLLAMDATEAQIIKLCEEAKQHHFYAVCVNSGYVPVAAQQLAGSSVKVCSVIGFPLGAGLTAAKAFEAQA
AINAGAQEIDMVINVGWLKSGKIADVKADIKAVRDNCAATPLKVILETCLLSDEQIVQVCKMCRELDVAFVKTSTGFSTG
GAKEEHVKLMRATVGPVMGVKASGAVRDRATAETMIQAGATRIGTSSGVAIVSGQQAAASGY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790841, Length=194, Percent_Identity=29.3814432989691, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23265; Mature: 23134

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTNYAHYIDHTLLAMDATEAQIIKLCEEAKQHHFYAVCVNSGYVPVAAQQLAGSSVKVC
CCCCHHHHHHHHHHEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHCCCCEEEH
SVIGFPLGAGLTAAKAFEAQAAINAGAQEIDMVINVGWLKSGKIADVKADIKAVRDNCAA
HHCCCCCCCCCHHHHHHHHHHHHHCCHHHEEEEEEECCCCCCCEEHHHHHHHHHHHCCCC
TPLKVILETCLLSDEQIVQVCKMCRELDVAFVKTSTGFSTGGAKEEHVKLMRATVGPVMG
CHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCHHHC
VKASGAVRDRATAETMIQAGATRIGTSSGVAIVSGQQAAASGY
CCCCCCHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCHHCCCC
>Mature Secondary Structure 
TTNYAHYIDHTLLAMDATEAQIIKLCEEAKQHHFYAVCVNSGYVPVAAQQLAGSSVKVC
CCCHHHHHHHHHHEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHCCCCEEEH
SVIGFPLGAGLTAAKAFEAQAAINAGAQEIDMVINVGWLKSGKIADVKADIKAVRDNCAA
HHCCCCCCCCCHHHHHHHHHHHHHCCHHHEEEEEEECCCCCCCEEHHHHHHHHHHHCCCC
TPLKVILETCLLSDEQIVQVCKMCRELDVAFVKTSTGFSTGGAKEEHVKLMRATVGPVMG
CHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCHHHC
VKASGAVRDRATAETMIQAGATRIGTSSGVAIVSGQQAAASGY
CCCCCCHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]