Click here to switch to the map view.

The map label for this gene is ybfM [H]

Identifier: 153949180

GI number: 153949180

Start: 3273399

End: 3274820

Strand: Reverse

Name: ybfM [H]

Synonym: YpsIP31758_2905

Alternate gene names: 153949180

Gene position: 3274820-3273399 (Counterclockwise)

Preceding gene: 153949655

Following gene: 153950374

Centisome position: 69.33

GC content: 48.87

Gene sequence:

>1422_bases
ATGGTTACGCACTGTCATATTGCTGCACACAAGGCTAAACGTAAAACGTTAGCGCTCGCCATCGCGGGTGTATTGTTCGG
AACAGGATTTATGGCGGCCCCAGAGGCCAGAGCTGACGGTTTTATTGATGATTCATCCCTGACTGGCGGGATTTATTATT
GGCAGCGACAGCGTGATCGTAAGGATATGACGCCAACCAGCCCAGAGTACGGCAAATATGTCGCTAACCTGCATCACTCC
ACTTTTAACGCTAATTTAGCTTTCTCTTCAGGTTATGTGGCGGACATGTTTGGTCTCGATTTAGCGGCATTTGGCGCGGT
TGAAATATCGAACAGCGGCCCGGCAGCACCAAATGAAATTGGCTTCAGTGACGCCAAAACCCGCTGGGACGAAAAGTGGA
CCGGGGATAAGAGTGGCGTCAGTGTTTATAGAGCCGCAGCCAAATTTAAATTAGGTGATTTCTGGGCGCGCGGGGGGTAT
ATCCAGCCAACGGGGCAGACACTGTTAGCACCACACTGGAGCTTTATGCCAGGGACTTATCGTGGCGCGGAAGGTGGCGC
GAAATTTGATTTTGATACTGCTGGTGCGTTGTCCATGTCTTATATGTGGACCGATGAATATAAAGCGCCGTGGTACCAAA
ATATGTATCACTTCCGTCAAGCGGATGGCCTGACTGGTGTCAGTTACCTGCATTCATTTGGTGCTAAATACGACTTTAAA
AATAATCTGGTGATGGAAGCGGCTTTCGGCCAGGCTAAAGATTATATGGACCAGTACTTTGCTAAAGCGTCCTATGCCTT
CCCGGTTGCCGGTAATGATCTGCGCACCACCTACCAATTCTATGGCGCAAAAGACAAAGTTGATGGCGGTGCGAGCAATG
CTAATGATGTCTATGATGGGCTAGCCTGGCTACAAGCGCTGACGCTGGGTTACACCACGGGTCCATTTGACCTGCGTTTG
GAAGGGACCTGGGCTAAAGCTGATGGTAACCAAGGTTACTTCCTACAACGTATGACCCCAGGCTATGCCACATCAAATGG
TCGTTTGGATGTCTGGTGGGATTCCCGCTCTGACTTCAACGCCAACGGTGAAAAAGCACTGTTTGGTTGTGTGATGTATG
ACCTGAAAAATTGGAATATGGCTGGCTGGTCGGTAGGCACCTCCTATGCTTATGGTTGGGATGCGAAGCCAAGCACCAAT
CCAAAATTTGACCAAAATACCCGTCTGAAAGAATCAGCATGGAACTTTGACATTCTCTATACCCTGCAAGAAGGCCGGGC
AAAAGGGACGCTCTTCAAGCTGCACTACACCCTGTATGACAACCACACCAATATCCCAAGTTATGGCGGTGGGTTCGGTA
ACGTCTTCCAAGATGAAAAAGACGTTAAATTTATCGTAATTGCACCATTTACTCTCTTCTGA

Upstream 100 bases:

>100_bases
CAAAATTTTACCCACTTAGGGTTTTTAAGGCGAAGTCTGTGAGCTGTGGTGGACTCAGGCAACGCACTTCAAATGTGATG
TCAAAGAGGAATTTTTTCAT

Downstream 100 bases:

>100_bases
TTTTGATAATTCTCCCCGGCAGTGATGTTGGGGAGATAGCCGGCAGCGTTGGATGGCTCGAAAATCAGATAACCCGCGTT
GCATTGATGCAGCCTATACC

Product: OprD family outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MVTHCHIAAHKAKRKTLALAIAGVLFGTGFMAAPEARADGFIDDSSLTGGIYYWQRQRDRKDMTPTSPEYGKYVANLHHS
TFNANLAFSSGYVADMFGLDLAAFGAVEISNSGPAAPNEIGFSDAKTRWDEKWTGDKSGVSVYRAAAKFKLGDFWARGGY
IQPTGQTLLAPHWSFMPGTYRGAEGGAKFDFDTAGALSMSYMWTDEYKAPWYQNMYHFRQADGLTGVSYLHSFGAKYDFK
NNLVMEAAFGQAKDYMDQYFAKASYAFPVAGNDLRTTYQFYGAKDKVDGGASNANDVYDGLAWLQALTLGYTTGPFDLRL
EGTWAKADGNQGYFLQRMTPGYATSNGRLDVWWDSRSDFNANGEKALFGCVMYDLKNWNMAGWSVGTSYAYGWDAKPSTN
PKFDQNTRLKESAWNFDILYTLQEGRAKGTLFKLHYTLYDNHTNIPSYGGGFGNVFQDEKDVKFIVIAPFTLF

Sequences:

>Translated_473_residues
MVTHCHIAAHKAKRKTLALAIAGVLFGTGFMAAPEARADGFIDDSSLTGGIYYWQRQRDRKDMTPTSPEYGKYVANLHHS
TFNANLAFSSGYVADMFGLDLAAFGAVEISNSGPAAPNEIGFSDAKTRWDEKWTGDKSGVSVYRAAAKFKLGDFWARGGY
IQPTGQTLLAPHWSFMPGTYRGAEGGAKFDFDTAGALSMSYMWTDEYKAPWYQNMYHFRQADGLTGVSYLHSFGAKYDFK
NNLVMEAAFGQAKDYMDQYFAKASYAFPVAGNDLRTTYQFYGAKDKVDGGASNANDVYDGLAWLQALTLGYTTGPFDLRL
EGTWAKADGNQGYFLQRMTPGYATSNGRLDVWWDSRSDFNANGEKALFGCVMYDLKNWNMAGWSVGTSYAYGWDAKPSTN
PKFDQNTRLKESAWNFDILYTLQEGRAKGTLFKLHYTLYDNHTNIPSYGGGFGNVFQDEKDVKFIVIAPFTLF
>Mature_473_residues
MVTHCHIAAHKAKRKTLALAIAGVLFGTGFMAAPEARADGFIDDSSLTGGIYYWQRQRDRKDMTPTSPEYGKYVANLHHS
TFNANLAFSSGYVADMFGLDLAAFGAVEISNSGPAAPNEIGFSDAKTRWDEKWTGDKSGVSVYRAAAKFKLGDFWARGGY
IQPTGQTLLAPHWSFMPGTYRGAEGGAKFDFDTAGALSMSYMWTDEYKAPWYQNMYHFRQADGLTGVSYLHSFGAKYDFK
NNLVMEAAFGQAKDYMDQYFAKASYAFPVAGNDLRTTYQFYGAKDKVDGGASNANDVYDGLAWLQALTLGYTTGPFDLRL
EGTWAKADGNQGYFLQRMTPGYATSNGRLDVWWDSRSDFNANGEKALFGCVMYDLKNWNMAGWSVGTSYAYGWDAKPSTN
PKFDQNTRLKESAWNFDILYTLQEGRAKGTLFKLHYTLYDNHTNIPSYGGGFGNVFQDEKDVKFIVIAPFTLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786897, Length=468, Percent_Identity=68.3760683760684, Blast_Score=650, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 52674; Mature: 52674

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTHCHIAAHKAKRKTLALAIAGVLFGTGFMAAPEARADGFIDDSSLTGGIYYWQRQRDR
CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
KDMTPTSPEYGKYVANLHHSTFNANLAFSSGYVADMFGLDLAAFGAVEISNSGPAAPNEI
CCCCCCCCHHHHHHHHHCCCEEECEEEECCCCCHHHHCCCHHHEEEEEECCCCCCCCCCC
GFSDAKTRWDEKWTGDKSGVSVYRAAAKFKLGDFWARGGYIQPTGQTLLAPHWSFMPGTY
CCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCEECCCCCEEECCCCCCCCCCC
RGAEGGAKFDFDTAGALSMSYMWTDEYKAPWYQNMYHFRQADGLTGVSYLHSFGAKYDFK
CCCCCCCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCEECC
NNLVMEAAFGQAKDYMDQYFAKASYAFPVAGNDLRTTYQFYGAKDKVDGGASNANDVYDG
CCEEEEEHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHH
LAWLQALTLGYTTGPFDLRLEGTWAKADGNQGYFLQRMTPGYATSNGRLDVWWDSRSDFN
HHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEEEECCCCEECCCCCEEEEECCCCCCC
ANGEKALFGCVMYDLKNWNMAGWSVGTSYAYGWDAKPSTNPKFDQNTRLKESAWNFDILY
CCCCCEEEEEEEEECCCCCCCCEECCCCEEECCCCCCCCCCCCCCCCCCHHCCCCEEEEE
TLQEGRAKGTLFKLHYTLYDNHTNIPSYGGGFGNVFQDEKDVKFIVIAPFTLF
EEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCEECC
>Mature Secondary Structure
MVTHCHIAAHKAKRKTLALAIAGVLFGTGFMAAPEARADGFIDDSSLTGGIYYWQRQRDR
CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
KDMTPTSPEYGKYVANLHHSTFNANLAFSSGYVADMFGLDLAAFGAVEISNSGPAAPNEI
CCCCCCCCHHHHHHHHHCCCEEECEEEECCCCCHHHHCCCHHHEEEEEECCCCCCCCCCC
GFSDAKTRWDEKWTGDKSGVSVYRAAAKFKLGDFWARGGYIQPTGQTLLAPHWSFMPGTY
CCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCEECCCCCEEECCCCCCCCCCC
RGAEGGAKFDFDTAGALSMSYMWTDEYKAPWYQNMYHFRQADGLTGVSYLHSFGAKYDFK
CCCCCCCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCEECC
NNLVMEAAFGQAKDYMDQYFAKASYAFPVAGNDLRTTYQFYGAKDKVDGGASNANDVYDG
CCEEEEEHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHH
LAWLQALTLGYTTGPFDLRLEGTWAKADGNQGYFLQRMTPGYATSNGRLDVWWDSRSDFN
HHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEEEECCCCEECCCCCEEEEECCCCCCC
ANGEKALFGCVMYDLKNWNMAGWSVGTSYAYGWDAKPSTNPKFDQNTRLKESAWNFDILY
CCCCCEEEEEEEEECCCCCCCCEECCCCEEECCCCCCCCCCCCCCCCCCHHCCCCEEEEE
TLQEGRAKGTLFKLHYTLYDNHTNIPSYGGGFGNVFQDEKDVKFIVIAPFTLF
EEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]