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The map label for this gene is sss [H]

Identifier: 153949143

GI number: 153949143

Start: 4157513

End: 4158481

Strand: Reverse

Name: sss [H]

Synonym: YpsIP31758_3686

Alternate gene names: 153949143

Gene position: 4158481-4157513 (Counterclockwise)

Preceding gene: 153948839

Following gene: 153948456

Centisome position: 88.04

GC content: 43.03

Gene sequence:

>969_bases
ATGAATCAGGCTAATTATGATGAGATTCTTCAAGACTATTTTTTTAGTAAATCATTAAGGCCTGCAACAGAATGGAGCTA
TCGAAAGGTGATTAATTCCTTTAGACGTTATATTGGTGACAATCTGTTGCCTGGTGAGGTTGACCGACTAACCGTCTTGA
ACTGGCGGCGACATGTCTTGAACAAACAAGGGCTTTCATCAATAACCTGGAATAATAAAGTAGCGCATATGAGAGCTATT
TTTAACCATGCGCTTTTACATGATCTTGTCTCATTCAAAAATAATCCGTTTAATGGCGTTATTGTCAGACCTGATGTGAA
ACGAAAAAAAACACTGACTCAATCTGAAATTAAAAAAATTTATTTGATTATGGAAGCGAGAGAAAGGGAAGAGCATGTTG
GAATAATGGGTAAATCACGATCTGCATTAAGACCCGCATGGTTCTGGCTCACGGTGGTTGATACATTGCGTTATACCGGC
ATGAGACAAAATCAGCTCCTGCATATACGCCTGGGGGACGTTAATCTTAATGACGGGTGGATAAATCTACGGCCAGAAGC
CTCGAAAAATCACAAAGAGCATCGGATACCCATAGCCCGAGTGTTACGTCCTAGACTGGAGCGGCTGGTTGCCACGGCGA
TAGAAAAGGGGGCTAATCAAGTGGATCAGTTATTCAACATCAGCCGGATTGACGGGAGAAAAGAGACCGTCACTGAAAAT
ATGGACAGTCCCCCGTTACGTTCTTTCTTCCGCAGGCTTTCAGTCGAATGCCGTTGTACGATTAGTCCACACCGATTTCG
ACATACTATCGCCACTGAGATGATGAAATCACCGGATCGTAATCTGAAAGTGGTTCAGACCCTGCTAGGGCATTCAAGTA
TTGCGGTCACGTTGGAATATGTTGAGGGCGATATAGACAGCCTCAGATTGGCGTTGGAAGAGACTTTCGAGAGAAAAGAG
GTTTTTTAA

Upstream 100 bases:

>100_bases
TTATTTTTACCAATGGGTCTCAGCCCACTGACAGTATTTGGCTGTCGCCTAATAAATAGAGCATTAATAACGTATTTAAT
AAATCTATATGGAGATAGAA

Downstream 100 bases:

>100_bases
AAAAAATCGGCATAACAGAAAGAAAAAACTACCGCTTTCCTTAACAGGATATTGACAGGTGCGCTGAAAAACTGTCAATA
TCCTCCGCCTTAAGACGCAA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MNQANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLSSITWNNKVAHMRAI
FNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTG
MRQNQLLHIRLGDVNLNDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTEN
MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFERKE
VF

Sequences:

>Translated_322_residues
MNQANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLSSITWNNKVAHMRAI
FNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTG
MRQNQLLHIRLGDVNLNDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTEN
MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFERKE
VF
>Mature_322_residues
MNQANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVLNKQGLSSITWNNKVAHMRAI
FNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKIYLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTG
MRQNQLLHIRLGDVNLNDGWINLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTEN
MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFERKE
VF

Specific function: Potential site-specific recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37698; Mature: 37698

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHH
YLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGW
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCE
INLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTEN
EEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEY
CCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEE
VEGDIDSLRLALEETFERKEVF
HHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQANYDEILQDYFFSKSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRLTVLNWRRHVL
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
NKQGLSSITWNNKVAHMRAIFNHALLHDLVSFKNNPFNGVIVRPDVKRKKTLTQSEIKKI
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHH
YLIMEAREREEHVGIMGKSRSALRPAWFWLTVVDTLRYTGMRQNQLLHIRLGDVNLNDGW
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCE
INLRPEASKNHKEHRIPIARVLRPRLERLVATAIEKGANQVDQLFNISRIDGRKETVTEN
EEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEY
CCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEE
VEGDIDSLRLALEETFERKEVF
HHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11021913 [H]