Click here to switch to the map view.

The map label for this gene is allS [H]

Identifier: 153949076

GI number: 153949076

Start: 1559217

End: 1560095

Strand: Reverse

Name: allS [H]

Synonym: YpsIP31758_1330

Alternate gene names: 153949076

Gene position: 1560095-1559217 (Counterclockwise)

Preceding gene: 153947198

Following gene: 153948348

Centisome position: 33.03

GC content: 51.54

Gene sequence:

>879_bases
ATGCATTATTCCCCTGAGGCATTGATTGCTTTTGTTGAAGCCGCGGCCCTTGGATCTTTCTCAGCCGCCGCCCGTAAGCT
GCGTAAAAGCCAATCAACCATCAGCACTGCTATCGCCAATCTGGAAGCGGACCTTGGCTTAACCCTATTTGACCGACAAG
CCCGTCAGCCAGTGTTAACCGATCACGGTCGCCGTGTGTTGGCTCACGTACAAGAGATTTTGGCCGCCGGTGAGCGCCTG
ACTGATTTATCTATCCGTCTGGCGGGTCAAGTTGAGACGCGATTAACATTCGTTCTATCTGATACCTATTATCAGCCAGC
ACATCATGAAAATCTGCTACACCGCTTTGAGCAGCGCTACCCTGATGTCGAATTCGAATGTCTGGTTGCCGAAGATGAAG
ATGTCATTGACCTCTTGCAACTCAAACGCGCCCATATCGGTGTAGTGGAAATGCAAGAACGCTATCCCCCGGATATTGCG
GCCACTCGGCTGGCCGCACAGACTGAAATGGCGGTGTTTGTGCTACGCGGTCATCCTCTGACCAGACTTCCTCACCTGCA
AAATGAGCAACTGGCCACCACACGTCAGCTGTGTCTGAACACCTATAACCGCACTGATCATAATCAATCTCAAGGTTTGA
CATGGTCCGCCCCCAGCTATTTGATGTTGCTAGAGATGGCTGAGCAAGGCTTTGGCTGGGCGATCTTACCCCGTTGGCTG
GTAGAACAATTCGGGCGTGAAAAACTGGTGACTTTGCCGGTGCAAGGCTGGCCAAAAATGATCTCCATTGATGCGGTTTG
GTCGAAAAAAAGCCCACCGGGGCCTGCTGGCTATTGGCTATTAGATCAATTAACGGAAGGCACTAACTCACCACACTGA

Upstream 100 bases:

>100_bases
AAACACCTACTTAAATAAGTTAATAGCACATTGTTGCAGGTGATATCATCGCTTTTTAAGATAGATTAAAAATAGAATCC
ATCGATAAAGTAGATACATC

Downstream 100 bases:

>100_bases
TGACGATAACGCGCTGATTAGCACTGTGATCGCCACAACTTACACAACCGATGAAAACGCATACACTACAATAGCGCTTA
TTTTTATTATTGCTGCTATC

Product: LysR family substrate binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLFDRQARQPVLTDHGRRVLAHVQEILAAGERL
TDLSIRLAGQVETRLTFVLSDTYYQPAHHENLLHRFEQRYPDVEFECLVAEDEDVIDLLQLKRAHIGVVEMQERYPPDIA
ATRLAAQTEMAVFVLRGHPLTRLPHLQNEQLATTRQLCLNTYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWL
VEQFGREKLVTLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH

Sequences:

>Translated_292_residues
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLFDRQARQPVLTDHGRRVLAHVQEILAAGERL
TDLSIRLAGQVETRLTFVLSDTYYQPAHHENLLHRFEQRYPDVEFECLVAEDEDVIDLLQLKRAHIGVVEMQERYPPDIA
ATRLAAQTEMAVFVLRGHPLTRLPHLQNEQLATTRQLCLNTYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWL
VEQFGREKLVTLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH
>Mature_292_residues
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLFDRQARQPVLTDHGRRVLAHVQEILAAGERL
TDLSIRLAGQVETRLTFVLSDTYYQPAHHENLLHRFEQRYPDVEFECLVAEDEDVIDLLQLKRAHIGVVEMQERYPPDIA
ATRLAAQTEMAVFVLRGHPLTRLPHLQNEQLATTRQLCLNTYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWL
VEQFGREKLVTLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH

Specific function: Positive regulator essential for the expression of allD operon. Binds to the allD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=123, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788481, Length=266, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786508, Length=146, Percent_Identity=27.3972602739726, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32955; Mature: 32955

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLFDRQARQPVLT
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHCCCCCHH
DHGRRVLAHVQEILAAGERLTDLSIRLAGQVETRLTFVLSDTYYQPAHHENLLHRFEQRY
HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHC
PDVEFECLVAEDEDVIDLLQLKRAHIGVVEMQERYPPDIAATRLAAQTEMAVFVLRGHPL
CCCCEEEEEECCCHHHHHHHHHHHHCCCEEHHHHCCCCHHHHHHHHHHHEEEEEEECCCC
TRLPHLQNEQLATTRQLCLNTYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWL
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCEEHHHHHH
VEQFGREKLVTLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH
HHHCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLFDRQARQPVLT
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHCCCCCHH
DHGRRVLAHVQEILAAGERLTDLSIRLAGQVETRLTFVLSDTYYQPAHHENLLHRFEQRY
HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHC
PDVEFECLVAEDEDVIDLLQLKRAHIGVVEMQERYPPDIAATRLAAQTEMAVFVLRGHPL
CCCCEEEEEECCCHHHHHHHHHHHHCCCEEHHHHCCCCHHHHHHHHHHHEEEEEEECCCC
TRLPHLQNEQLATTRQLCLNTYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWL
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCEEHHHHHH
VEQFGREKLVTLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH
HHHCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA