Click here to switch to the map view.

The map label for this gene is yabJ [H]

Identifier: 153948972

GI number: 153948972

Start: 641199

End: 641579

Strand: Direct

Name: yabJ [H]

Synonym: YpsIP31758_0542

Alternate gene names: 153948972

Gene position: 641199-641579 (Clockwise)

Preceding gene: 153948026

Following gene: 153949398

Centisome position: 13.58

GC content: 35.43

Gene sequence:

>381_bases
ATGAAGTCAGTCATTGAAACAAAAAATGCACCTTCCGCTATTGGCCCTTATTCTCAAGCAATTTGTTTTAATGGGATTCT
GTATGCTTCAGGGCAGATACCGATCAATCCTGATACAGGGGATCTTGTTGAAAATGACATTGAAAAACAAACTCGTCAGG
TATTGAAAAATATTGATGCTGTTCTTCTACAGGCTGGAACAACAAAAGATAAAATAGTAAAAACGACTATTTTTATCACG
AATATCAATAATTCATCTCAAGTAAATGATATTTATGCTGATTATTTTAAAGGAACTATTTTCCCTGCACGTTCTACGGT
TGAAGTCTCTGCTTTGCCAAAAGGTGCCTTGGTAGAAATAGATGTTATTGCTGGGGTTTGA

Upstream 100 bases:

>100_bases
AAAGGCGTTTTTTTACTTAAAGGGGCAGTTGCTGAGGTGGCGATGCGTCTTGAAACGTCAGAGCAGACAATTTATCGTTA
TTTAAAATAGAGGATATATC

Downstream 100 bases:

>100_bases
TTTTTTAAATTAAAATAAACACAGTGATAACTCTACCATTTTTATATTTTAATGGCAGAGTATATAAAATTCCCACTGCT
GATTAGTATCGAATTTCGGC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKSVIETKNAPSAIGPYSQAICFNGILYASGQIPINPDTGDLVENDIEKQTRQVLKNIDAVLLQAGTTKDKIVKTTIFIT
NINNSSQVNDIYADYFKGTIFPARSTVEVSALPKGALVEIDVIAGV

Sequences:

>Translated_126_residues
MKSVIETKNAPSAIGPYSQAICFNGILYASGQIPINPDTGDLVENDIEKQTRQVLKNIDAVLLQAGTTKDKIVKTTIFIT
NINNSSQVNDIYADYFKGTIFPARSTVEVSALPKGALVEIDVIAGV
>Mature_126_residues
MKSVIETKNAPSAIGPYSQAICFNGILYASGQIPINPDTGDLVENDIEKQTRQVLKNIDAVLLQAGTTKDKIVKTTIFIT
NINNSSQVNDIYADYFKGTIFPARSTVEVSALPKGALVEIDVIAGV

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=124, Percent_Identity=44.3548387096774, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=40.4761904761905, Blast_Score=109, Evalue=7e-26,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=45.2380952380952, Blast_Score=108, Evalue=9e-26,
Organism=Escherichia coli, GI1787245, Length=125, Percent_Identity=33.6, Blast_Score=72, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71982075, Length=123, Percent_Identity=47.1544715447154, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=47.1544715447154, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=47.1544715447154, Blast_Score=117, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=39.1666666666667, Blast_Score=89, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=43.1372549019608, Blast_Score=85, Evalue=3e-18,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=37.9032258064516, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13544; Mature: 13544

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSVIETKNAPSAIGPYSQAICFNGILYASGQIPINPDTGDLVENDIEKQTRQVLKNIDA
CCCCCCCCCCCCCCCCCHHHHHHCCEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
VLLQAGTTKDKIVKTTIFITNINNSSQVNDIYADYFKGTIFPARSTVEVSALPKGALVEI
EECCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCEEECCCCEEEEECCCCCCEEEE
DVIAGV
EEEECC
>Mature Secondary Structure
MKSVIETKNAPSAIGPYSQAICFNGILYASGQIPINPDTGDLVENDIEKQTRQVLKNIDA
CCCCCCCCCCCCCCCCCHHHHHHCCEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
VLLQAGTTKDKIVKTTIFITNINNSSQVNDIYADYFKGTIFPARSTVEVSALPKGALVEI
EECCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCEEECCCCEEEEECCCCCCEEEE
DVIAGV
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]