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The map label for this gene is lsrB [H]

Identifier: 153948942

GI number: 153948942

Start: 3978501

End: 3979520

Strand: Direct

Name: lsrB [H]

Synonym: YpsIP31758_3524

Alternate gene names: 153948942

Gene position: 3978501-3979520 (Clockwise)

Preceding gene: 153950060

Following gene: 153950396

Centisome position: 84.23

GC content: 50.78

Gene sequence:

>1020_bases
ATGAGAACACAAAGATTAAAAAAATTAGCACTGGTTTGCGCTCTTGGATTTGCCTGTATCACTACCGCACAAGCTGCGGA
ACGCATCGCATTTATCCCGAAACTGGTCGGGGTCGGTTTCTTCACCAGTGGCGGTAAAGGTGCCGTCGATGCAGGTAAAG
CATTGGGGGTGGATGTCACCTATGACGGCCCGACCGAACCGAGCGTTTCCGGCCAGGTCCAATTGATCAATAACTTTGTT
AATCAGGGCTATAACGCCATCGTGGTGTCTGCGGTATCACCGGATGGCCTGTGCCCAGCCTTGAAGCGCGCCATGCAACG
GGGCGTCAAAATCCTAACCTGGGACTCCGATACCAAACCAGAGTGTCGTTCGGTGTATATCAACCAAGGTACGCCAAATC
AATTGGGATCAATGTTGGTGGATATGGCGGCTAATCAGGTGAAAAAAGATCAAGCCAAAGTGGCGTTCTTCTATTCCAGC
CCGACGGTGACCGATCAGAACCAGTGGGTCAATGAGGCGAAGAAAAAGATTCAACAAGAGCACCCCGGCTGGGAAATCGT
CACTACTCAGTTTGGTTATAACGATGCCACAAAATCCCTGCAAACCGCCGAGGGTATTTTAAAAGCCTATGGCGATTTGG
ATGCGATTATTGCTCCGGACGCTAACGCCCTGCCTGCGGCCGCACAAGCCGCCGAAAACCTGAAGCGCGCTAATGTTGCC
ATCGTCGGCTTCAGTACCCCGAACGTGATGCGCCCCTATGTCGAGCGTGGCACGGTCAAAGAGTTCGGCCTCTGGGATGT
GGTGAATCAAGGCAAAATCTCAGTGTATGTCGCCAATGAGATGCTGAAAAAAGGCGATCTGAATGTAGGGGATAAGATTG
ATATCCCGAATATTGGTGTGGTTGAGGTCTCCCCTAACCGTGTGCAGGGCTACGACTATGAGGCGAAAGGCAACGGTATC
GTTTTACTGCCACAGCGCGTCATCTTCACCAAAGAAAATATCAGTAAATACGACTTTTAA

Upstream 100 bases:

>100_bases
GGCATTTGATTTATGAATGGCTACAACGTCGTCGCAGTCGAAAGGCCTCGGCGTGATACCTAAACCCAACACCCAACAAG
ACAGTGATTCGGAGATAGCA

Downstream 100 bases:

>100_bases
TCTTAGCGGCCCGCCCCCGTGGTGGGCCTGAACAGAACGAATGGAGTAATTAAAGATGGCTGATTTAGACGATATCAAAG
ACGGTAAAGATTTCGGTATT

Product: ABC transporter periplasmic protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MRTQRLKKLALVCALGFACITTAQAAERIAFIPKLVGVGFFTSGGKGAVDAGKALGVDVTYDGPTEPSVSGQVQLINNFV
NQGYNAIVVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSVYINQGTPNQLGSMLVDMAANQVKKDQAKVAFFYSS
PTVTDQNQWVNEAKKKIQQEHPGWEIVTTQFGYNDATKSLQTAEGILKAYGDLDAIIAPDANALPAAAQAAENLKRANVA
IVGFSTPNVMRPYVERGTVKEFGLWDVVNQGKISVYVANEMLKKGDLNVGDKIDIPNIGVVEVSPNRVQGYDYEAKGNGI
VLLPQRVIFTKENISKYDF

Sequences:

>Translated_339_residues
MRTQRLKKLALVCALGFACITTAQAAERIAFIPKLVGVGFFTSGGKGAVDAGKALGVDVTYDGPTEPSVSGQVQLINNFV
NQGYNAIVVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSVYINQGTPNQLGSMLVDMAANQVKKDQAKVAFFYSS
PTVTDQNQWVNEAKKKIQQEHPGWEIVTTQFGYNDATKSLQTAEGILKAYGDLDAIIAPDANALPAAAQAAENLKRANVA
IVGFSTPNVMRPYVERGTVKEFGLWDVVNQGKISVYVANEMLKKGDLNVGDKIDIPNIGVVEVSPNRVQGYDYEAKGNGI
VLLPQRVIFTKENISKYDF
>Mature_339_residues
MRTQRLKKLALVCALGFACITTAQAAERIAFIPKLVGVGFFTSGGKGAVDAGKALGVDVTYDGPTEPSVSGQVQLINNFV
NQGYNAIVVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSVYINQGTPNQLGSMLVDMAANQVKKDQAKVAFFYSS
PTVTDQNQWVNEAKKKIQQEHPGWEIVTTQFGYNDATKSLQTAEGILKAYGDLDAIIAPDANALPAAAQAAENLKRANVA
IVGFSTPNVMRPYVERGTVKEFGLWDVVNQGKISVYVANEMLKKGDLNVGDKIDIPNIGVVEVSPNRVQGYDYEAKGNGI
VLLPQRVIFTKENISKYDF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=340, Percent_Identity=84.7058823529412, Blast_Score=567, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36680; Mature: 36680

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTQRLKKLALVCALGFACITTAQAAERIAFIPKLVGVGFFTSGGKGAVDAGKALGVDVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEEEEEE
YDGPTEPSVSGQVQLINNFVNQGYNAIVVSAVSPDGLCPALKRAMQRGVKILTWDSDTKP
ECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCC
ECRSVYINQGTPNQLGSMLVDMAANQVKKDQAKVAFFYSSPTVTDQNQWVNEAKKKIQQE
CCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
HPGWEIVTTQFGYNDATKSLQTAEGILKAYGDLDAIIAPDANALPAAAQAAENLKRANVA
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCEE
IVGFSTPNVMRPYVERGTVKEFGLWDVVNQGKISVYVANEMLKKGDLNVGDKIDIPNIGV
EEEECCCCHHHHHHHCCCCCCCCHHHCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCE
VEVSPNRVQGYDYEAKGNGIVLLPQRVIFTKENISKYDF
EEECCCCEECCCEECCCCCEEEECCEEEEECCCCCCCCC
>Mature Secondary Structure
MRTQRLKKLALVCALGFACITTAQAAERIAFIPKLVGVGFFTSGGKGAVDAGKALGVDVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEEEEEE
YDGPTEPSVSGQVQLINNFVNQGYNAIVVSAVSPDGLCPALKRAMQRGVKILTWDSDTKP
ECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCC
ECRSVYINQGTPNQLGSMLVDMAANQVKKDQAKVAFFYSSPTVTDQNQWVNEAKKKIQQE
CCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
HPGWEIVTTQFGYNDATKSLQTAEGILKAYGDLDAIIAPDANALPAAAQAAENLKRANVA
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCEE
IVGFSTPNVMRPYVERGTVKEFGLWDVVNQGKISVYVANEMLKKGDLNVGDKIDIPNIGV
EEEECCCCHHHHHHHCCCCCCCCHHHCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCE
VEVSPNRVQGYDYEAKGNGIVLLPQRVIFTKENISKYDF
EEECCCCEECCCEECCCCCEEEECCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA