Click here to switch to the map view.

The map label for this gene is gspD [C]

Identifier: 153948843

GI number: 153948843

Start: 705447

End: 706766

Strand: Reverse

Name: gspD [C]

Synonym: YpsIP31758_0601

Alternate gene names: 153948843

Gene position: 706766-705447 (Counterclockwise)

Preceding gene: 153948715

Following gene: 153947860

Centisome position: 14.96

GC content: 38.41

Gene sequence:

>1320_bases
ATGAATCGACATCAACTAAAAGATAAAAAACAAAATATAATTATATTCTCGGTTATCTTTATTCTCTACTTTTTGTTTGA
AAACACAGCTACTGCCAAGCAAATTTATCTGCCCATTGGTGGTTCACACATTATAAAAACACAGGAAGAGATAGATACGG
TTTTTGTCTCTGCCGCAAAAACAGCTGACTATGAAATAGTCGATAATAACAGTGTTATTATTTATGCTAAAAAAGAAGGC
TTGGCTGAATTCACTTTGTTCAACAAAAATCATCAGCCGATAAGTAAAACACGAGTGCTGGTGAATAATACTATCAATGA
TGCTTATCGAAGAATACGTACAGAGTTTCCTGATAGTAAGATAGAAATAAATAAGATAGGCGAAAGCTATATACTTACGG
GGAGTGCCGAAACCGAGGAAGCAAAAGATACCATTACCAGTATTATCGGCGAGGCGACTGCAAGTAAAAAAGAAAAAGAG
AGAGAAGAGAGTTATCAAAGCAACCCTGAATATCGGGGTGTTATTAATAAAATTAAATTACCTCAAGCCAATCAAGTTAA
TGTAAAACTCACTATTGTCGAAATAACGAAAGATTTTACTGAAAACATAGGGCTAGATTGGAATTCGATAAAAAGTGCAG
CAGGCGCTTTTCAGTTTTTAAATTTTAATGCACAAAGTATCAGCACATTAGTCCATGCGATTAATGATGAGGCGATAGCC
AAAGTGTTGGCAGAACCGAATCTATCGGTCTTATCTGGTGAATATGCCTCCTTCTTGGTCGGCGGTGAAATCCCGATTGT
TAGCACCAATCAGAATGGTATTAGTGTCGAATATAAAGAGTTTGGCATTAAGTTAAACATTGGTGCCAAAGTGAATGAGA
AGAAACGTATTCGTGTCATGTTGGGTGAAGAGGTCAGCAGTATCGATAAAGTGTTTAATCTTAGAGGTGGGGACTCCTAC
CCTTCATTACGCATACGTAAGGCAAATACCACAGTAGAGTTAGGCGATGGTGAAAGTTTTATTCTCGGTGGCCTGATCAG
TAGTACTGAACGGGAGTCGCTTAAAAAAATTCCGTTTATTGGTGATGTCCCCCTACTGGGTGCGTTATTCCGTAATGCAC
AAACTCAGAGGAATCAGAGTGAGCTGGTGGTTGTCGCTACCGTAAACCTGGTGAAACCCGTATCAGCAAGGCAGATTGAG
CTACCTGATTTTATGCATACCTCTACGGTAGAACGTTTTTTCAATCTGACCAATATCAAAGACGCTAAGCGTAGAAAGCA
GGCGAAAGAATTTCTGCAAAAAGGAGGTTTTATAAAATGA

Upstream 100 bases:

>100_bases
AAGCCGGTGAGGTGTTTTTAACCCCCAAGAGTGGCGATCACAAACGAATAGATTTGGATGAAATTATCCCTACATTACAG
ACAATAAGAGAGCTAAGAGG

Downstream 100 bases:

>100_bases
AATGGATATTCATCATAATGGCTATTCTCTTTTCTACTAGAGGCATTACTGCGTTCACAATTAAACCGTCCGCTAATGAG
TACTCTTATGTATTAATAGG

Product: type II/III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MNRHQLKDKKQNIIIFSVIFILYFLFENTATAKQIYLPIGGSHIIKTQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEG
LAEFTLFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTITSIIGEATASKKEKE
REESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFLNFNAQSISTLVHAINDEAIA
KVLAEPNLSVLSGEYASFLVGGEIPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFNLRGGDSY
PSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIE
LPDFMHTSTVERFFNLTNIKDAKRRKQAKEFLQKGGFIK

Sequences:

>Translated_439_residues
MNRHQLKDKKQNIIIFSVIFILYFLFENTATAKQIYLPIGGSHIIKTQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEG
LAEFTLFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTITSIIGEATASKKEKE
REESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFLNFNAQSISTLVHAINDEAIA
KVLAEPNLSVLSGEYASFLVGGEIPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFNLRGGDSY
PSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIE
LPDFMHTSTVERFFNLTNIKDAKRRKQAKEFLQKGGFIK
>Mature_439_residues
MNRHQLKDKKQNIIIFSVIFILYFLFENTATAKQIYLPIGGSHIIKTQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEG
LAEFTLFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTITSIIGEATASKKEKE
REESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFLNFNAQSISTLVHAINDEAIA
KVLAEPNLSVLSGEYASFLVGGEIPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVMLGEEVSSIDKVFNLRGGDSY
PSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIE
LPDFMHTSTVERFFNLTNIKDAKRRKQAKEFLQKGGFIK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=199, Percent_Identity=31.6582914572864, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789793, Length=241, Percent_Identity=26.9709543568465, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 49075; Mature: 49075

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRHQLKDKKQNIIIFSVIFILYFLFENTATAKQIYLPIGGSHIIKTQEEIDTVFVSAAK
CCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECHHHHHHHEEEECC
TADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSK
CCCEEEEECCEEEEEEECCCCEEEEEECCCCCCHHHHEEEEECCHHHHHHHHHHCCCCCE
IEINKIGESYILTGSAETEEAKDTITSIIGEATASKKEKEREESYQSNPEYRGVINKIKL
EEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
PQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFLNFNAQSISTLVHAINDEAIA
CCCCCEEEEEEEEEEEHHHHHHCCCCHHHHHHHHHHHHEECCCHHHHHHHHHHHCHHHHH
KVLAEPNLSVLSGEYASFLVGGEIPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVM
HHHCCCCCCEECCCHHHEEECCCEEEEECCCCCCEEEEHHCCEEEEECCCCCCCCEEEEE
LGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFI
ECHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCEEEEEHHHCCHHHHHHHCCCCC
GDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVERFFNLTNIK
CCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHCCCH
DAKRRKQAKEFLQKGGFIK
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNRHQLKDKKQNIIIFSVIFILYFLFENTATAKQIYLPIGGSHIIKTQEEIDTVFVSAAK
CCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECHHHHHHHEEEECC
TADYEIVDNNSVIIYAKKEGLAEFTLFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSK
CCCEEEEECCEEEEEEECCCCEEEEEECCCCCCHHHHEEEEECCHHHHHHHHHHCCCCCE
IEINKIGESYILTGSAETEEAKDTITSIIGEATASKKEKEREESYQSNPEYRGVINKIKL
EEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
PQANQVNVKLTIVEITKDFTENIGLDWNSIKSAAGAFQFLNFNAQSISTLVHAINDEAIA
CCCCCEEEEEEEEEEEHHHHHHCCCCHHHHHHHHHHHHEECCCHHHHHHHHHHHCHHHHH
KVLAEPNLSVLSGEYASFLVGGEIPIVSTNQNGISVEYKEFGIKLNIGAKVNEKKRIRVM
HHHCCCCCCEECCCHHHEEECCCEEEEECCCCCCEEEEHHCCEEEEECCCCCCCCEEEEE
LGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFI
ECHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCEEEEEHHHCCHHHHHHHCCCCC
GDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVERFFNLTNIK
CCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHCCCH
DAKRRKQAKEFLQKGGFIK
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]