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The map label for this gene is rof [H]

Identifier: 153948786

GI number: 153948786

Start: 1238450

End: 1238704

Strand: Reverse

Name: rof [H]

Synonym: YpsIP31758_1033

Alternate gene names: 153948786

Gene position: 1238704-1238450 (Counterclockwise)

Preceding gene: 153949604

Following gene: 153947483

Centisome position: 26.23

GC content: 49.02

Gene sequence:

>255_bases
ATGAGTGAAGAGTATCAACCCATCAATTGTGATGACTACGATAATCTGGAACTCGCCTGCCAACATCACCTGATACTGAC
GTTGAAGTTGAGAGGCGGTGAGATCGTAGAAGGCAAAGCCAGCGATCTACTGCTGAGAAAAAAGGTCGAGTACCTGATTG
TCGAGCAAGAAGGGACAATGCGCGAATTGCGTCTGGACCATATCGCCAGCTTCAGTCACCCCGAAATTGGAACGGTCGTA
GTGAGCGCATCATAG

Upstream 100 bases:

>100_bases
AAAGCATTGGACGAAGTTGCGGCTAACGACGCACTCCCGTCCTCCGTTAGGGAACAGGCGGCCTATGCCGCCGCTAACTT
ATTGGTGAGCGATTATGTCG

Downstream 100 bases:

>100_bases
TTTCCACTTCCTTGTGAAAAACGGGTCGCTGAAGAGCGGCCCGTTTTGCATTTATCCTATTTACATTTACCTGGCTTACA
TTTTACCCGACTTACCTTTA

Product: Rho-binding antiterminator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 83

Protein sequence:

>84_residues
MSEEYQPINCDDYDNLELACQHHLILTLKLRGGEIVEGKASDLLLRKKVEYLIVEQEGTMRELRLDHIASFSHPEIGTVV
VSAS

Sequences:

>Translated_84_residues
MSEEYQPINCDDYDNLELACQHHLILTLKLRGGEIVEGKASDLLLRKKVEYLIVEQEGTMRELRLDHIASFSHPEIGTVV
VSAS
>Mature_83_residues
SEEYQPINCDDYDNLELACQHHLILTLKLRGGEIVEGKASDLLLRKKVEYLIVEQEGTMRELRLDHIASFSHPEIGTVVV
SAS

Specific function: Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination [H]

COG id: COG4568

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081698, Length=84, Percent_Identity=73.8095238095238, Blast_Score=132, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002730
- InterPro:   IPR009778 [H]

Pfam domain/function: PF07073 ROF [H]

EC number: NA

Molecular weight: Translated: 9510; Mature: 9379

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEYQPINCDDYDNLELACQHHLILTLKLRGGEIVEGKASDLLLRKKVEYLIVEQEGTM
CCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCEEECCCCCHHHEECCEEEEEECCCCCH
RELRLDHIASFSHPEIGTVVVSAS
HHHHHHHHCCCCCCCCCEEEEECC
>Mature Secondary Structure 
SEEYQPINCDDYDNLELACQHHLILTLKLRGGEIVEGKASDLLLRKKVEYLIVEQEGTM
CCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCEEECCCCCHHHEECCEEEEEECCCCCH
RELRLDHIASFSHPEIGTVVVSAS
HHHHHHHHCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9723924; 9278503 [H]