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The map label for this gene is rbsC6 [H]

Identifier: 153948763

GI number: 153948763

Start: 3657706

End: 3658851

Strand: Reverse

Name: rbsC6 [H]

Synonym: YpsIP31758_3250

Alternate gene names: 153948763

Gene position: 3658851-3657706 (Counterclockwise)

Preceding gene: 153948327

Following gene: 153947189

Centisome position: 77.46

GC content: 54.01

Gene sequence:

>1146_bases
ATGATGAAAGCAACAACTGGCACGGCGTTGGCGAGTCACCTGCCCGGTGGAGCGTCATGGTCACGGGAAAATATGCTGCT
GCTTCTGTTAAAGATGCGCACCTTTATTGCCCTGTTTCTGATCCTGGGTTTCTTTTCAATCATGGTCCCTGGGTTCTTAG
CCACGGGTAGCTTGATCATCATGGTGAAGCATATTGCGATTAATGCCTTCCTCGCATTAGGCATCACCTTTGTCATTATC
ACCGCAGGTATCGATCTCTCCATCGGCGCGACGCTGGGGCTGTGCGGCATGATTGCCGGTTGGATGATCACCCAAGGCAT
TGTCTTGCCGATGTTTGGCATCGCTATCTTCCCCAGTGTTTGGGTTGTGGTTCCGGTGGTGTTAGTTATCGGGGCACTCA
TCGGTGCGGTTAATGGCTGGATCATTACTCGCTACAACGTCGCCCCGTTTATTTGCACCCTTGGCACCATGTATGTGGTG
CGAGGTGCCTCGATGTTGATCTCTGGTGGCGAAACCTTCCCCGGCTTACAAGGCAATCCGCAACTGGGGAATACCGGTTT
TGACCTGCTGGGCTCGGGAACGCTACTGGGGTTGCCGATCGCCATCTGGATCATGTTCATTCTGGCGCTGGTGATTGCTT
ACGTTGCCCGCCGCCTTCCGTTTGGCCGCCATGTTTATGCCATCGGGGATAACGAACGCGCTGCTGAACTTTCTGGTGTC
AAAGTGCGTCAGGTGAAAATCTGGGTTTACACCCTATCCGGCTTCTGTGCCGCGATAGCGGGGATTATCGTGTCTGCCCA
ATTGGTTGCCAGCCACCCGGCCAATGGCAGTGGCTTCGAAATGAATGCTATCGCCGCTGTTGTTCTGGGCGGGACATCGC
TGGCAGGCGGGCGGGGGACCATTCTTGGTACGCTGATTGGCGCTTTTGTTATCGGCATCTTGGCTGATGGGCTGGTGATG
ATGGGCATCAGTGAATTCTGGCAAATGGTGATCAAAGGCATCGTGATTATCGTGGCCGTGATTATCGATCAGATGCAAAA
CCGGATGCAGCACAAGGCGGCGATTGTGTCGCAAAAAGTGACCGCCATCCCCTCTGACGTCACCTCTCAGGCGGGAATCA
TCTCTCAGACGGTAAAAAGTGAGTAG

Upstream 100 bases:

>100_bases
ACCGCATTCTGGTGATGTCGAACGGCAAACTGACGGCAAATTTATCCCGTCAATCGGCCAGTGAATCGGCATTGGTTACA
GCAAGCGCACAAGGGTTTGA

Downstream 100 bases:

>100_bases
CGGCCAGGTCACGCGTGGATAGCGGCTAAAGGGCTGAGCGGATCGACGTGAAGTGAGCTGAATGAGCTGAACTGAATCAC
AGGCCACTGCATACGGCAGT

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MMKATTGTALASHLPGGASWSRENMLLLLLKMRTFIALFLILGFFSIMVPGFLATGSLIIMVKHIAINAFLALGITFVII
TAGIDLSIGATLGLCGMIAGWMITQGIVLPMFGIAIFPSVWVVVPVVLVIGALIGAVNGWIITRYNVAPFICTLGTMYVV
RGASMLISGGETFPGLQGNPQLGNTGFDLLGSGTLLGLPIAIWIMFILALVIAYVARRLPFGRHVYAIGDNERAAELSGV
KVRQVKIWVYTLSGFCAAIAGIIVSAQLVASHPANGSGFEMNAIAAVVLGGTSLAGGRGTILGTLIGAFVIGILADGLVM
MGISEFWQMVIKGIVIIVAVIIDQMQNRMQHKAAIVSQKVTAIPSDVTSQAGIISQTVKSE

Sequences:

>Translated_381_residues
MMKATTGTALASHLPGGASWSRENMLLLLLKMRTFIALFLILGFFSIMVPGFLATGSLIIMVKHIAINAFLALGITFVII
TAGIDLSIGATLGLCGMIAGWMITQGIVLPMFGIAIFPSVWVVVPVVLVIGALIGAVNGWIITRYNVAPFICTLGTMYVV
RGASMLISGGETFPGLQGNPQLGNTGFDLLGSGTLLGLPIAIWIMFILALVIAYVARRLPFGRHVYAIGDNERAAELSGV
KVRQVKIWVYTLSGFCAAIAGIIVSAQLVASHPANGSGFEMNAIAAVVLGGTSLAGGRGTILGTLIGAFVIGILADGLVM
MGISEFWQMVIKGIVIIVAVIIDQMQNRMQHKAAIVSQKVTAIPSDVTSQAGIISQTVKSE
>Mature_381_residues
MMKATTGTALASHLPGGASWSRENMLLLLLKMRTFIALFLILGFFSIMVPGFLATGSLIIMVKHIAINAFLALGITFVII
TAGIDLSIGATLGLCGMIAGWMITQGIVLPMFGIAIFPSVWVVVPVVLVIGALIGAVNGWIITRYNVAPFICTLGTMYVV
RGASMLISGGETFPGLQGNPQLGNTGFDLLGSGTLLGLPIAIWIMFILALVIAYVARRLPFGRHVYAIGDNERAAELSGV
KVRQVKIWVYTLSGFCAAIAGIIVSAQLVASHPANGSGFEMNAIAAVVLGGTSLAGGRGTILGTLIGAFVIGILADGLVM
MGISEFWQMVIKGIVIIVAVIIDQMQNRMQHKAAIVSQKVTAIPSDVTSQAGIISQTVKSE

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=320, Percent_Identity=40.625, Blast_Score=211, Evalue=7e-56,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=33.0097087378641, Blast_Score=168, Evalue=6e-43,
Organism=Escherichia coli, GI1790524, Length=328, Percent_Identity=32.3170731707317, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI145693152, Length=349, Percent_Identity=31.2320916905444, Blast_Score=147, Evalue=9e-37,
Organism=Escherichia coli, GI1789992, Length=369, Percent_Identity=31.4363143631436, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI87082395, Length=311, Percent_Identity=32.7974276527331, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787794, Length=324, Percent_Identity=30.2469135802469, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787793, Length=329, Percent_Identity=30.6990881458967, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788471, Length=339, Percent_Identity=31.858407079646, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI145693214, Length=271, Percent_Identity=36.90036900369, Blast_Score=108, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 39943; Mature: 39943

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKATTGTALASHLPGGASWSRENMLLLLLKMRTFIALFLILGFFSIMVPGFLATGSLII
CCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
MVKHIAINAFLALGITFVIITAGIDLSIGATLGLCGMIAGWMITQGIVLPMFGIAIFPSV
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVVVPVVLVIGALIGAVNGWIITRYNVAPFICTLGTMYVVRGASMLISGGETFPGLQGNP
HHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCC
QLGNTGFDLLGSGTLLGLPIAIWIMFILALVIAYVARRLPFGRHVYAIGDNERAAELSGV
CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCC
KVRQVKIWVYTLSGFCAAIAGIIVSAQLVASHPANGSGFEMNAIAAVVLGGTSLAGGRGT
EEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEECCCCCCCCCHH
ILGTLIGAFVIGILADGLVMMGISEFWQMVIKGIVIIVAVIIDQMQNRMQHKAAIVSQKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAIPSDVTSQAGIISQTVKSE
HHCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMKATTGTALASHLPGGASWSRENMLLLLLKMRTFIALFLILGFFSIMVPGFLATGSLII
CCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
MVKHIAINAFLALGITFVIITAGIDLSIGATLGLCGMIAGWMITQGIVLPMFGIAIFPSV
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVVVPVVLVIGALIGAVNGWIITRYNVAPFICTLGTMYVVRGASMLISGGETFPGLQGNP
HHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCC
QLGNTGFDLLGSGTLLGLPIAIWIMFILALVIAYVARRLPFGRHVYAIGDNERAAELSGV
CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCC
KVRQVKIWVYTLSGFCAAIAGIIVSAQLVASHPANGSGFEMNAIAAVVLGGTSLAGGRGT
EEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEECCCCCCCCCHH
ILGTLIGAFVIGILADGLVMMGISEFWQMVIKGIVIIVAVIIDQMQNRMQHKAAIVSQKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAIPSDVTSQAGIISQTVKSE
HHCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]