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The map label for this gene is rbsC [H]

Identifier: 153948518

GI number: 153948518

Start: 3677708

End: 3678745

Strand: Direct

Name: rbsC [H]

Synonym: YpsIP31758_3268

Alternate gene names: 153948518

Gene position: 3677708-3678745 (Clockwise)

Preceding gene: 153950670

Following gene: 153947045

Centisome position: 77.86

GC content: 51.73

Gene sequence:

>1038_bases
ATGAAAAAGAACCGTTTTCTACCTATCGACGGCACCATTTCCGGCTTGTTAGGGATTTTTTGTCTGGCAACACTGGCCTT
CAGTCTGGCGATGCCTGGCCGTTTCTTTACCGAGAACACCTTTCTGAGTATTGCGTTTCAGTTGCCAGAGTTGGGGTTAC
TGACCTTCGCCATGTTTGTACCGATGCTCAGCGGCGGATTAAACCTGTCTATTATTGGCACCGCAAACCTGACCAGTCTG
TTTATGGCCTGGCTGCTTATCCAATATGTTCCCGCAGATGCCAGTACCACGACACAACTGATGTGGCTACTGCTGGCACT
GATGGGGGCAGCGCTGATTGCCGTGGTTATCGGCACACTGACTGGGTTGATGATCGCCCGTATTGGCGCACATCCCATTT
TAGTGACGTTGGGCAGTATGACCATTATCAGCGGCATCGGTGTTTATCTGACCAAAGGCGCGGCGCTCAGTGGCATGCCA
CCGATTGTTCGCAGTATGGGTTCCGAAGTGGTGATGGGCGTGCCGATCCCGATGATTATTTTCATCGTGGCCTCACTGCT
GCTGGCGCTGTTCTTAGGTAAAACTCGCCTGGGCAAAACGATTTATATGTGCGGCAGCAATATTAACGCCACGTGGTTCA
GCGGTATTCGTACTGACCGGGTCATGATGGCTATCTACACCATGTCCAGTCTGCTGTGTGTACTGGCGGGCCTGATCATG
ATGTCGCGCTTCAACTCTGCGCGTATGGGCTACGGCGACTCTTATTTATTGCTTACCGTGTTGGCTATCGTCTTGGGCGG
AACCAACCCGTTCGGTGGTGTGGGTAAAGTGAGCCATGTGTTCTGCGCTCTGCTGGTATTACAAGTGATCGCCACGGGGC
TGAGCCTACTCGGCGTTAGCCTGCACGTTAATCTGGCGGTCTGGGGTATCACCCTGATCTTCGCCCTGGCCTTTAAGTTT
TTTAAAGAGAAATGGAAAGCCAAACGTGCCATGAGGCAGAACCGTTTGAATTATCTAAAAAAATGTCACGCCAAGTGA

Upstream 100 bases:

>100_bases
CAACATCGTGATTGGCATGGTGATCGTCGCCGCCATTTGCGTAACCCACTACAAAAAACGCAAAGAAACTGATGTTGGCT
TTGTCTGACAGGGGTGTTTT

Downstream 100 bases:

>100_bases
TTGGGATTCCAGTGAGCGCAGCTAACTGTTTATGTAGATAAACACCGCTGCAACGTCAAGTACGAAGGGTTCCCCAAAGT
CATTGGCGTTCCAGCAAGGC

Product: carbohydrate ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MKKNRFLPIDGTISGLLGIFCLATLAFSLAMPGRFFTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSL
FMAWLLIQYVPADASTTTQLMWLLLALMGAALIAVVIGTLTGLMIARIGAHPILVTLGSMTIISGIGVYLTKGAALSGMP
PIVRSMGSEVVMGVPIPMIIFIVASLLLALFLGKTRLGKTIYMCGSNINATWFSGIRTDRVMMAIYTMSSLLCVLAGLIM
MSRFNSARMGYGDSYLLLTVLAIVLGGTNPFGGVGKVSHVFCALLVLQVIATGLSLLGVSLHVNLAVWGITLIFALAFKF
FKEKWKAKRAMRQNRLNYLKKCHAK

Sequences:

>Translated_345_residues
MKKNRFLPIDGTISGLLGIFCLATLAFSLAMPGRFFTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSL
FMAWLLIQYVPADASTTTQLMWLLLALMGAALIAVVIGTLTGLMIARIGAHPILVTLGSMTIISGIGVYLTKGAALSGMP
PIVRSMGSEVVMGVPIPMIIFIVASLLLALFLGKTRLGKTIYMCGSNINATWFSGIRTDRVMMAIYTMSSLLCVLAGLIM
MSRFNSARMGYGDSYLLLTVLAIVLGGTNPFGGVGKVSHVFCALLVLQVIATGLSLLGVSLHVNLAVWGITLIFALAFKF
FKEKWKAKRAMRQNRLNYLKKCHAK
>Mature_345_residues
MKKNRFLPIDGTISGLLGIFCLATLAFSLAMPGRFFTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSL
FMAWLLIQYVPADASTTTQLMWLLLALMGAALIAVVIGTLTGLMIARIGAHPILVTLGSMTIISGIGVYLTKGAALSGMP
PIVRSMGSEVVMGVPIPMIIFIVASLLLALFLGKTRLGKTIYMCGSNINATWFSGIRTDRVMMAIYTMSSLLCVLAGLIM
MSRFNSARMGYGDSYLLLTVLAIVLGGTNPFGGVGKVSHVFCALLVLQVIATGLSLLGVSLHVNLAVWGITLIFALAFKF
FKEKWKAKRAMRQNRLNYLKKCHAK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=212, Percent_Identity=29.7169811320755, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790524, Length=288, Percent_Identity=26.7361111111111, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693152, Length=209, Percent_Identity=29.1866028708134, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=26.4150943396226, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790191, Length=208, Percent_Identity=30.7692307692308, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1789992, Length=123, Percent_Identity=30.8943089430894, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87082395, Length=351, Percent_Identity=25.3561253561254, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37120; Mature: 37120

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNRFLPIDGTISGLLGIFCLATLAFSLAMPGRFFTENTFLSIAFQLPELGLLTFAMFV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCHHHHHHHHHH
PMLSGGLNLSIIGTANLTSLFMAWLLIQYVPADASTTTQLMWLLLALMGAALIAVVIGTL
HHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TGLMIARIGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVVMGVPIPMII
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEECCCHHHHH
FIVASLLLALFLGKTRLGKTIYMCGSNINATWFSGIRTDRVMMAIYTMSSLLCVLAGLIM
HHHHHHHHHHHHCCHHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
MSRFNSARMGYGDSYLLLTVLAIVLGGTNPFGGVGKVSHVFCALLVLQVIATGLSLLGVS
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LHVNLAVWGITLIFALAFKFFKEKWKAKRAMRQNRLNYLKKCHAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKNRFLPIDGTISGLLGIFCLATLAFSLAMPGRFFTENTFLSIAFQLPELGLLTFAMFV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCHHHHHHHHHH
PMLSGGLNLSIIGTANLTSLFMAWLLIQYVPADASTTTQLMWLLLALMGAALIAVVIGTL
HHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TGLMIARIGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVVMGVPIPMII
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEECCCHHHHH
FIVASLLLALFLGKTRLGKTIYMCGSNINATWFSGIRTDRVMMAIYTMSSLLCVLAGLIM
HHHHHHHHHHHHCCHHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
MSRFNSARMGYGDSYLLLTVLAIVLGGTNPFGGVGKVSHVFCALLVLQVIATGLSLLGVS
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LHVNLAVWGITLIFALAFKFFKEKWKAKRAMRQNRLNYLKKCHAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]