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The map label for this gene is ecpD [H]

Identifier: 153948241

GI number: 153948241

Start: 1947422

End: 1948159

Strand: Direct

Name: ecpD [H]

Synonym: YpsIP31758_1676

Alternate gene names: 153948241

Gene position: 1947422-1948159 (Clockwise)

Preceding gene: 153947773

Following gene: 153949510

Centisome position: 41.23

GC content: 44.44

Gene sequence:

>738_bases
GTGCGACTCTTAACGACACTGACACTCTTAATATTATCGGTTGTGGCGACTGTGGCTCGTGCTGAAGTGATGATCAGTGG
GACACGTGTTATTTATGAAGAGAAACAACGTGAGGGGGTGGTAAAGGTTTCCAATACGGGCGATATGCCGGTCCTGCTTC
AGGCCTGGATAGATAAAGGTGATGCGAACGCACGCCCAGAGGCTATCAAGGTGCCGTTTAGTGTAACCCCCCCAGTAGTA
CGTTTAGACCCTAAAAGGGATCAGACTATTCGTCTTTTTCGCACTGATGGTGGATTAGCGGCTGATCGTGAAACCCTATT
TTGGTTTAACTTATTAGAAGTCCCGCCAAAGCCAATCCAACGTGCGGCTGGTGGTGAGAACAAAATGCAATTGGCTTTCC
GTACCAGAATTAAAATGTTTTACCGCCCTGAAGGATTAACCGTATTACCTGCGCAAGCGGCCAAGAGTCTCGCATTTTCA
ATGAAAGGCAATCAGATCGTCATAAAGAATGCCTCACCGTATTACATTACCTTGAGAAAGCTAGAATTACGCACGTCAGA
GAAAGGGCCTGTATTGGCTAATTTTACTAAAATCAATAATAAAATGGTTGCCCCTTTTAGTGAACTAAGCTTACCTACGA
GTGCAAAAGCATCGATCAATAATTCGGCACAAGTTTTTTATTCTGTTATTAATGATCAGGGCGGCGAAACTCAAGGTACG
CAAAAACTGACCCAATAA

Upstream 100 bases:

>100_bases
GCATAAAATGGGAGCTTAGTGCTCCCAGCTTTATAAGTTCGACATCATTGGAACCCATATGCGCAGAACGCTCCTTACTA
TATTGTCCTTTTTAAGGACA

Downstream 100 bases:

>100_bases
AACTATAAAAAATACAAATTAAGGGTAATTTGTATTTTTTGCACTTTTATATACTGCATTTAATTTAATGGCCTCGATAT
AATGCTTAGTGCTTTCATAT

Product: fimbrial assembly chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MRLLTTLTLLILSVVATVARAEVMISGTRVIYEEKQREGVVKVSNTGDMPVLLQAWIDKGDANARPEAIKVPFSVTPPVV
RLDPKRDQTIRLFRTDGGLAADRETLFWFNLLEVPPKPIQRAAGGENKMQLAFRTRIKMFYRPEGLTVLPAQAAKSLAFS
MKGNQIVIKNASPYYITLRKLELRTSEKGPVLANFTKINNKMVAPFSELSLPTSAKASINNSAQVFYSVINDQGGETQGT
QKLTQ

Sequences:

>Translated_245_residues
MRLLTTLTLLILSVVATVARAEVMISGTRVIYEEKQREGVVKVSNTGDMPVLLQAWIDKGDANARPEAIKVPFSVTPPVV
RLDPKRDQTIRLFRTDGGLAADRETLFWFNLLEVPPKPIQRAAGGENKMQLAFRTRIKMFYRPEGLTVLPAQAAKSLAFS
MKGNQIVIKNASPYYITLRKLELRTSEKGPVLANFTKINNKMVAPFSELSLPTSAKASINNSAQVFYSVINDQGGETQGT
QKLTQ
>Mature_245_residues
MRLLTTLTLLILSVVATVARAEVMISGTRVIYEEKQREGVVKVSNTGDMPVLLQAWIDKGDANARPEAIKVPFSVTPPVV
RLDPKRDQTIRLFRTDGGLAADRETLFWFNLLEVPPKPIQRAAGGENKMQLAFRTRIKMFYRPEGLTVLPAQAAKSLAFS
MKGNQIVIKNASPYYITLRKLELRTSEKGPVLANFTKINNKMVAPFSELSLPTSAKASINNSAQVFYSVINDQGGETQGT
QKLTQ

Specific function: Probably mediates assembly of a pilin [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=244, Percent_Identity=41.3934426229508, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1788428, Length=236, Percent_Identity=33.4745762711864, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1789532, Length=236, Percent_Identity=32.6271186440678, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1790771, Length=241, Percent_Identity=32.3651452282158, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1786743, Length=238, Percent_Identity=31.9327731092437, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787171, Length=237, Percent_Identity=31.6455696202532, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1786936, Length=239, Percent_Identity=29.7071129707113, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788677, Length=156, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87082203, Length=245, Percent_Identity=28.1632653061224, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87081806, Length=236, Percent_Identity=30.9322033898305, Blast_Score=74, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27136; Mature: 27136

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLTTLTLLILSVVATVARAEVMISGTRVIYEEKQREGVVKVSNTGDMPVLLQAWIDKG
CHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEHHCCCCEEEEECCCCCHHHHEEHHCCC
DANARPEAIKVPFSVTPPVVRLDPKRDQTIRLFRTDGGLAADRETLFWFNLLEVPPKPIQ
CCCCCCCEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCHHHH
RAAGGENKMQLAFRTRIKMFYRPEGLTVLPAQAAKSLAFSMKGNQIVIKNASPYYITLRK
HHCCCCCCEEEEEEEEEEEEECCCCCEEECHHHHHHEEEEECCCEEEEECCCCEEEEEEE
LELRTSEKGPVLANFTKINNKMVAPFSELSLPTSAKASINNSAQVFYSVINDQGGETQGT
EEEECCCCCCEEEEEEECCCEEECCHHHHCCCCCCCCCCCCCHHEEHEECCCCCCCCCCH
QKLTQ
HHHCC
>Mature Secondary Structure
MRLLTTLTLLILSVVATVARAEVMISGTRVIYEEKQREGVVKVSNTGDMPVLLQAWIDKG
CHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEHHCCCCEEEEECCCCCHHHHEEHHCCC
DANARPEAIKVPFSVTPPVVRLDPKRDQTIRLFRTDGGLAADRETLFWFNLLEVPPKPIQ
CCCCCCCEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCHHHH
RAAGGENKMQLAFRTRIKMFYRPEGLTVLPAQAAKSLAFSMKGNQIVIKNASPYYITLRK
HHCCCCCCEEEEEEEEEEEEECCCCCEEECHHHHHHEEEEECCCEEEEECCCCEEEEEEE
LELRTSEKGPVLANFTKINNKMVAPFSELSLPTSAKASINNSAQVFYSVINDQGGETQGT
EEEECCCCCCEEEEEEECCCEEECCHHHHCCCCCCCCCCCCCHHEEHEECCCCCCCCCCH
QKLTQ
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]