Click here to switch to the map view.

The map label for this gene is rsd

Identifier: 153948104

GI number: 153948104

Start: 4338134

End: 4338643

Strand: Direct

Name: rsd

Synonym: YpsIP31758_3852

Alternate gene names: 153948104

Gene position: 4338134-4338643 (Clockwise)

Preceding gene: 153950785

Following gene: 153949362

Centisome position: 91.85

GC content: 44.71

Gene sequence:

>510_bases
ATGCTCAACCGACTGGAAAGCCTGACTCAACGCGTTGGCGGTAGTAATGAATTAATTGATCAATGGCTTCATGCGCGTAA
AGAACTTTTAGTCTCTTATTGCACCGTGATCGGTATTAAGCCGCAAAAAGAGAAGCATACCCCGCTTAATGCAAAAACGC
TGGAGAACTTTTGCCATAATTTAGTCGACTATCTTTCTTCAGGCCATTTCCATATCTATGACAGAATTATCAAAGAGGTG
GAAGGCGCATCTAGCCCAAAAATGGCACTGACCGCCAAAATTCATCCTGCATTAAAAAACAACACTCAAACTATCATGGC
ATTCCATGATCGCTATACAAACATTGAAATCGACGACGATAGCTGCACCGAGTATCAACAAGCTTTATCGGATATCGGTG
AAGCGCTTGACGCCCGTTTCAAGCTGGAAGACCAATTAATTCAATGGGCCGCCGAATCTTGGCAAGCCGCCCAGCTAGCG
GATGCGGATAAAAAGAGCCAGGTCAACTGA

Upstream 100 bases:

>100_bases
CCATATCGTTGTTGCACAACCTCTATTTCACTGGCAATCTAGAAACCGGCTGTTACATTTTTGTAACCCACAATATTTTT
TCTTACTAATGGAGTCGTTC

Downstream 100 bases:

>100_bases
CCGCCGCCTGTAACTGCGAATAAACAGCAGATACGGGTAGCACGCATAAAATGAGCAAGCAGAATAGCCAGCTCATAAGT
AGGCTCTTGTAGTTTTAATT

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHNLVDYLSSGHFHIYDRIIKEV
EGASSPKMALTAKIHPALKNNTQTIMAFHDRYTNIEIDDDSCTEYQQALSDIGEALDARFKLEDQLIQWAAESWQAAQLA
DADKKSQVN

Sequences:

>Translated_169_residues
MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHNLVDYLSSGHFHIYDRIIKEV
EGASSPKMALTAKIHPALKNNTQTIMAFHDRYTNIEIDDDSCTEYQQALSDIGEALDARFKLEDQLIQWAAESWQAAQLA
DADKKSQVN
>Mature_169_residues
MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHNLVDYLSSGHFHIYDRIIKEV
EGASSPKMALTAKIHPALKNNTQTIMAFHDRYTNIEIDDDSCTEYQQALSDIGEALDARFKLEDQLIQWAAESWQAAQLA
DADKKSQVN

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family

Homologues:

Organism=Escherichia coli, GI1790428, Length=147, Percent_Identity=56.4625850340136, Blast_Score=172, Evalue=1e-44,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): RSD_YERP3 (A7FNH5)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001402803.1
- ProteinModelPortal:   A7FNH5
- SMR:   A7FNH5
- STRING:   A7FNH5
- GeneID:   5385321
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_3852
- eggNOG:   COG3160
- HOGENOM:   HBG416628
- OMA:   AGHFEIY
- ProtClustDB:   PRK11718
- BioCyc:   YPSE349747:YPSIP31758_3852-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01181
- InterPro:   IPR007448
- PIRSF:   PIRSF016548

Pfam domain/function: PF04353 Rsd_AlgQ

EC number: NA

Molecular weight: Translated: 19212; Mature: 19212

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHN
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LVDYLSSGHFHIYDRIIKEVEGASSPKMALTAKIHPALKNNTQTIMAFHDRYTNIEIDDD
HHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHCCCHHEEEEECCCCEEEECCC
SCTEYQQALSDIGEALDARFKLEDQLIQWAAESWQAAQLADADKKSQVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHN
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LVDYLSSGHFHIYDRIIKEVEGASSPKMALTAKIHPALKNNTQTIMAFHDRYTNIEIDDD
HHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHCCCHHEEEEECCCCEEEECCC
SCTEYQQALSDIGEALDARFKLEDQLIQWAAESWQAAQLADADKKSQVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA