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The map label for this gene is sdhC [H]

Identifier: 153948100

GI number: 153948100

Start: 3256148

End: 3256525

Strand: Reverse

Name: sdhC [H]

Synonym: YpsIP31758_2885

Alternate gene names: 153948100

Gene position: 3256525-3256148 (Counterclockwise)

Preceding gene: 153947129

Following gene: 153949963

Centisome position: 68.95

GC content: 45.5

Gene sequence:

>378_bases
GTGAAAAAACAAAGACCTGTCAATTTGGATCTGCAAACGATTCGATTTCCTGTTACTGCGATAGCGTCCATCTTACACCG
AGTCTCTGGCGTAATTACCTTCGTGGCTGTCGGTATCCTCCTCTGGCTGTTGGGTTTGTCTGTTTCCTCACAAGAAGGAT
TCATGCAGGCAGCAACCATCATGAATAGTTTTTTTGTTAAATTCATCTTTTGGGGAATACTCACTGCGCTGGCTTATCAC
ATTTGCGGTGGCATCCGTCACTTGTTAATGGATTTTGGCTATCTCGAAGAGAATTTAGCCGTGGGTACCCGTTCTGCTCA
AGTGGCAATGGGATTAACCCTCGTGTTGTCAGTTTTGGCTGGAGTCCTCGTATGGTAA

Upstream 100 bases:

>100_bases
ACTTAAACGTGCGATGTGAAGGGTTTCGACTCTTAACGCTGTCTGATTCCCCACCCAGGTCCGGAGGAAGGAAAATAATA
AGAGCTGTGTGGGCAAAACC

Downstream 100 bases:

>100_bases
GCAATGCTTCTGCGTTAGGGCGTAATGGAGTACACGATTGGTTGTTACTGCGTGCTTCTGCAATCGTCATCACCCTGTAT
GTCTTTTATATTCTGGGCTT

Product: succinate dehydrogenase cytochrome b556 large membrane subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQAATIMNSFFVKFIFWGILTALAYH
ICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSVLAGVLVW

Sequences:

>Translated_125_residues
MKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQAATIMNSFFVKFIFWGILTALAYH
ICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSVLAGVLVW
>Mature_125_residues
MKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQAATIMNSFFVKFIFWGILTALAYH
ICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSVLAGVLVW

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=125, Percent_Identity=77.6, Blast_Score=200, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13695; Mature: 13695

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQAATI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
MNSFFVKFIFWGILTALAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
GVLVW
HHHCC
>Mature Secondary Structure
MKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQAATI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
MNSFFVKFIFWGILTALAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
GVLVW
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]