Click here to switch to the map view.

The map label for this gene is ytfH [H]

Identifier: 153948063

GI number: 153948063

Start: 1880502

End: 1880903

Strand: Direct

Name: ytfH [H]

Synonym: YpsIP31758_1620

Alternate gene names: 153948063

Gene position: 1880502-1880903 (Clockwise)

Preceding gene: 153950862

Following gene: 153947424

Centisome position: 39.81

GC content: 48.01

Gene sequence:

>402_bases
GTGACAAAACTACAAAATATGAATGGCAACATTTCATTTCCGGAACAACTCAGGCGCGGTGAACTGCTTAATGTCGATTG
CCCGTCAAGAGAGATACTCAAGCGAGTGACCAGCCGCTGGGGGGTGTTGGTCTTGATCGCTTTGAGTAATGAAACACTGC
GTTTTAGTGCATTGAGACGAAAGATTGGTGGAGTCAGTGAGAAAATGTTGGCACAAACGCTCCAGCATCTTGAAGAAGAT
GGTTTTATTGACAGGACTGCTTATCCGGTAGTGCCACCTCACGTGGAATACAGCCTCACTCCGTTAGGAAAAGAGATCCA
AGAGCAGGTGGAAGGGCTGACGGTGTGGTTGGAGACAAACTTGCATCGGATTATGGAACAACGGCAGCAGCGGTCAGTAT
GA

Upstream 100 bases:

>100_bases
AGAAGACTATTTTGGATATATCTGCCCAAAATCATCCTTAAAGCCATCATATGCAATATACTCACTTTACGTAAGTACAT
ACCAAAAGGTTAGTGTGAGA

Downstream 100 bases:

>100_bases
CCGTCGTGATTTATCGTCTTTGGCCTCATATTCTGGTTGTGCCAGCGCCAACAGAAGATGGCCAACCTGTTTTATAGCGC
GGTGCTTGAAGGGGGTACCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MTKLQNMNGNISFPEQLRRGELLNVDCPSREILKRVTSRWGVLVLIALSNETLRFSALRRKIGGVSEKMLAQTLQHLEED
GFIDRTAYPVVPPHVEYSLTPLGKEIQEQVEGLTVWLETNLHRIMEQRQQRSV

Sequences:

>Translated_133_residues
MTKLQNMNGNISFPEQLRRGELLNVDCPSREILKRVTSRWGVLVLIALSNETLRFSALRRKIGGVSEKMLAQTLQHLEED
GFIDRTAYPVVPPHVEYSLTPLGKEIQEQVEGLTVWLETNLHRIMEQRQQRSV
>Mature_132_residues
TKLQNMNGNISFPEQLRRGELLNVDCPSREILKRVTSRWGVLVLIALSNETLRFSALRRKIGGVSEKMLAQTLQHLEEDG
FIDRTAYPVVPPHVEYSLTPLGKEIQEQVEGLTVWLETNLHRIMEQRQQRSV

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=123, Percent_Identity=61.7886178861789, Blast_Score=164, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15323; Mature: 15192

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLQNMNGNISFPEQLRRGELLNVDCPSREILKRVTSRWGVLVLIALSNETLRFSALRR
CCCCCCCCCCCCCHHHHCCCCEECCCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHH
KIGGVSEKMLAQTLQHLEEDGFIDRTAYPVVPPHVEYSLTPLGKEIQEQVEGLTVWLETN
HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHEEHHHHHH
LHRIMEQRQQRSV
HHHHHHHHHHCCC
>Mature Secondary Structure 
TKLQNMNGNISFPEQLRRGELLNVDCPSREILKRVTSRWGVLVLIALSNETLRFSALRR
CCCCCCCCCCCCHHHHCCCCEECCCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHH
KIGGVSEKMLAQTLQHLEEDGFIDRTAYPVVPPHVEYSLTPLGKEIQEQVEGLTVWLETN
HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHEEHHHHHH
LHRIMEQRQQRSV
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]