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The map label for this gene is ppdB [H]

Identifier: 153948014

GI number: 153948014

Start: 1178829

End: 1179437

Strand: Direct

Name: ppdB [H]

Synonym: YpsIP31758_0986

Alternate gene names: 153948014

Gene position: 1178829-1179437 (Clockwise)

Preceding gene: 153946863

Following gene: 153947386

Centisome position: 24.96

GC content: 48.44

Gene sequence:

>609_bases
ATGCCTTTAGTGGTCAATGTCTTGTCTACCCCACTCAACGCGCAGCCAACACGAACCGCGGGTTTTACCTTGCCTGAAAT
GATGCTGGCGCTAAGTTTCGGTAGCCTGATAGCGCTGAGCACAGCACAGGTCTTACCCAAATTAAGCCAGCAAATTTCGG
TGTTGCAACAGCATTATCGCCTGGAATTAGTAATGAATCAGGCTATGGGGGCTATGGAGAAAGATCTGCGCAGAGCGGGC
TTTTGCCACGGGAAATGTCAGGGGGAGGCCATAACGATAGAACATTATCTCGGTGAAACGGCTCACTCTTGCCTGATTGT
TGCTTATGATCTTAATTGCAATGGGAGATGGGAAGGGGCGAAACATCAAGAGTCAGAATATTTTGGCTATCGGCTACGCA
ATAAAGCGTTAGAGAGTCAGCGTGGCGAACTGAACTGCCATGGCCGTGGTTGGGAAAAACTGTTTGATCCACGAGATGTT
ACTGTGACTCACTTTTCCGTAACCCCTCTGTCTGGGCAAATTTTCAAATTGCGGCTTGTGGGGCATAAAACGGGTAATCC
AGCTATCCACCATCAGGTGACTTACCTTATCCGTGGGAATAACGTATGA

Upstream 100 bases:

>100_bases
TCATACTCAGTAGCCCCGCAGGACGTATTCGTCTGGTTATCTCAAGCCGTGGGCGTATAAGGTTATGTAGTGAACAACAA
TCCATGGCAGGCATCCATTT

Downstream 100 bases:

>100_bases
CGCAGGTATTTCAACGAGGCAGCAGTACCCTGGCGGCGGTTATGACACTTTTTTCTTTGGGATTATTTTGGCTATCAGCG
ATACATCGGCAATTAGACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MPLVVNVLSTPLNAQPTRTAGFTLPEMMLALSFGSLIALSTAQVLPKLSQQISVLQQHYRLELVMNQAMGAMEKDLRRAG
FCHGKCQGEAITIEHYLGETAHSCLIVAYDLNCNGRWEGAKHQESEYFGYRLRNKALESQRGELNCHGRGWEKLFDPRDV
TVTHFSVTPLSGQIFKLRLVGHKTGNPAIHHQVTYLIRGNNV

Sequences:

>Translated_202_residues
MPLVVNVLSTPLNAQPTRTAGFTLPEMMLALSFGSLIALSTAQVLPKLSQQISVLQQHYRLELVMNQAMGAMEKDLRRAG
FCHGKCQGEAITIEHYLGETAHSCLIVAYDLNCNGRWEGAKHQESEYFGYRLRNKALESQRGELNCHGRGWEKLFDPRDV
TVTHFSVTPLSGQIFKLRLVGHKTGNPAIHHQVTYLIRGNNV
>Mature_201_residues
PLVVNVLSTPLNAQPTRTAGFTLPEMMLALSFGSLIALSTAQVLPKLSQQISVLQQHYRLELVMNQAMGAMEKDLRRAGF
CHGKCQGEAITIEHYLGETAHSCLIVAYDLNCNGRWEGAKHQESEYFGYRLRNKALESQRGELNCHGRGWEKLFDPRDVT
VTHFSVTPLSGQIFKLRLVGHKTGNPAIHHQVTYLIRGNNV

Specific function: Not yet known [H]

COG id: COG4795

COG function: function code U; Type II secretory pathway, component PulJ

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789189, Length=191, Percent_Identity=30.3664921465969, Blast_Score=106, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR016419
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 22598; Mature: 22467

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLVVNVLSTPLNAQPTRTAGFTLPEMMLALSFGSLIALSTAQVLPKLSQQISVLQQHYR
CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LELVMNQAMGAMEKDLRRAGFCHGKCQGEAITIEHYLGETAHSCLIVAYDLNCNGRWEGA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHCCCCCCEEEEEEECCCCCCCCCC
KHQESEYFGYRLRNKALESQRGELNCHGRGWEKLFDPRDVTVTHFSVTPLSGQIFKLRLV
CCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCCCEEEEEEEECCCCCCEEEEEEE
GHKTGNPAIHHQVTYLIRGNNV
ECCCCCCCEEEEEEEEEECCCC
>Mature Secondary Structure 
PLVVNVLSTPLNAQPTRTAGFTLPEMMLALSFGSLIALSTAQVLPKLSQQISVLQQHYR
CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LELVMNQAMGAMEKDLRRAGFCHGKCQGEAITIEHYLGETAHSCLIVAYDLNCNGRWEGA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHCCCCCCEEEEEEECCCCCCCCCC
KHQESEYFGYRLRNKALESQRGELNCHGRGWEKLFDPRDVTVTHFSVTPLSGQIFKLRLV
CCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCCCEEEEEEEECCCCCCEEEEEEE
GHKTGNPAIHHQVTYLIRGNNV
ECCCCCCCEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814 [H]