Click here to switch to the map view.

The map label for this gene is phnM [H]

Identifier: 153947744

GI number: 153947744

Start: 4026724

End: 4027860

Strand: Direct

Name: phnM [H]

Synonym: YpsIP31758_3566

Alternate gene names: 153947744

Gene position: 4026724-4027860 (Clockwise)

Preceding gene: 153950789

Following gene: 153947281

Centisome position: 85.25

GC content: 55.23

Gene sequence:

>1137_bases
ATGATCCTCAATAACGTCAGCCTGATTCTTGAAGACAGCGTAGTCAGCGGATCGCTGGAAATCGTAGACGGTGTCATCCG
CAGTTACAGTGATCGCCCGACGCAGTTACCCGCCGCAATAGATGGCGAGAATGGCTGGCTACTGCCGGGGCTGATTGAAC
TGCATACCGATAATCTGGACAAATTTTTCACCCCGCGTCCCAATGTCGATTGGCCCGCCCATTCAGCGATGAGCAGCCAC
GATGCGCTGATGGTGGCCTGCGGTATCACCACGGTATTGGATGCGGTTGCCGTTGGTGATGTGCGCGATGGGGGTCACCG
ACTGGATAATCTGCAAAAGATGATTAATGCCGTGGTAGATAGCCAGCGTGCGGGCCTGAACCGGGCCGAGCACCGTATTC
ATTTACGCGGTGAACTACCCTATGAAAATACTCTGCCACTGTTCGAAGCCCTGATGGCGCAACCTGCGTTATCGTTGGTG
TCATTGATGGATCATTCACCGGGTCAACGTCAGTTCGCTTCGCGTGAGAAATACCGTGAATATTATCAGGGTAAATATCA
TCTTAGCGATCCGCAGATGGCGGCGTTTGAAGAAGAGCAGGTCGCGCTCTCTGCACGTTGGGCAGGGCCTAACCGCTCGG
CGATTGCTGCTCAATGTCGCGAGCGAGGCATTGCGCTAGCCAGCCACGATGATGCGACAGCCGATCATGTGGCGGAATCA
CAAGCGCTGGGCAGTGTGATTGCCGAGTTCCCGACCACAGAGGTGGCCGCCACCGCCTCTCATCAACTCGGTTTACAGGT
ATTGATGGGCGCACCGAATATTGTCCGTGGTGGCTCTCACTCCGGTAATGTTGCCGCTCATCACCTGGCTTCTCTGGGGG
TGCTGGATATTTTATCTTCTGATTATTACCCCGCCAGCCTGATGGATGCAGCGTTCCGTATCGCACACGACGCGAGCAAC
CGCTTCACCTTGCCACAAGCGGTCAATTTGGTGACCCGTAATCCGGCCAGAGCTTTAGGGCTAAATGACCGGGGTGTGAT
TGCCGAAGGTAAACGGGCTGACTTGATTCTGGCCCGCGCACATGGCGAGAACGTTTATGTGCAAAACGTCTGGCGTCAGG
GAGTTCGGGTGTTCTGA

Upstream 100 bases:

>100_bases
TTGTCGGGATTTTCCACGATGAGAGTGTGCGTAACCATGTCAGTGATCGTTTACTTACCATGACGCCCGCCCCCTCAGAG
ATCCGCACGGAGATCCCTGT

Downstream 100 bases:

>100_bases
TGGCGCGTTTAATCTATCTGATGGGGCCTTCTGGCGCGGGTAAGGATTGCCTGTTATCTGCACTGCGAAACGCCACACCG
CAAAATAGGGTGGTGGCACA

Product: phosphonate metabolism protein PhnM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MILNNVSLILEDSVVSGSLEIVDGVIRSYSDRPTQLPAAIDGENGWLLPGLIELHTDNLDKFFTPRPNVDWPAHSAMSSH
DALMVACGITTVLDAVAVGDVRDGGHRLDNLQKMINAVVDSQRAGLNRAEHRIHLRGELPYENTLPLFEALMAQPALSLV
SLMDHSPGQRQFASREKYREYYQGKYHLSDPQMAAFEEEQVALSARWAGPNRSAIAAQCRERGIALASHDDATADHVAES
QALGSVIAEFPTTEVAATASHQLGLQVLMGAPNIVRGGSHSGNVAAHHLASLGVLDILSSDYYPASLMDAAFRIAHDASN
RFTLPQAVNLVTRNPARALGLNDRGVIAEGKRADLILARAHGENVYVQNVWRQGVRVF

Sequences:

>Translated_378_residues
MILNNVSLILEDSVVSGSLEIVDGVIRSYSDRPTQLPAAIDGENGWLLPGLIELHTDNLDKFFTPRPNVDWPAHSAMSSH
DALMVACGITTVLDAVAVGDVRDGGHRLDNLQKMINAVVDSQRAGLNRAEHRIHLRGELPYENTLPLFEALMAQPALSLV
SLMDHSPGQRQFASREKYREYYQGKYHLSDPQMAAFEEEQVALSARWAGPNRSAIAAQCRERGIALASHDDATADHVAES
QALGSVIAEFPTTEVAATASHQLGLQVLMGAPNIVRGGSHSGNVAAHHLASLGVLDILSSDYYPASLMDAAFRIAHDASN
RFTLPQAVNLVTRNPARALGLNDRGVIAEGKRADLILARAHGENVYVQNVWRQGVRVF
>Mature_378_residues
MILNNVSLILEDSVVSGSLEIVDGVIRSYSDRPTQLPAAIDGENGWLLPGLIELHTDNLDKFFTPRPNVDWPAHSAMSSH
DALMVACGITTVLDAVAVGDVRDGGHRLDNLQKMINAVVDSQRAGLNRAEHRIHLRGELPYENTLPLFEALMAQPALSLV
SLMDHSPGQRQFASREKYREYYQGKYHLSDPQMAAFEEEQVALSARWAGPNRSAIAAQCRERGIALASHDDATADHVAES
QALGSVIAEFPTTEVAATASHQLGLQVLMGAPNIVRGGSHSGNVAAHHLASLGVLDILSSDYYPASLMDAAFRIAHDASN
RFTLPQAVNLVTRNPARALGLNDRGVIAEGKRADLILARAHGENVYVQNVWRQGVRVF

Specific function: Belongs to an operon involved in alkylphosphonate uptake and C-P lyase. Exact function not known [H]

COG id: COG3454

COG function: function code P; Metal-dependent hydrolase involved in phosphonate metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790533, Length=378, Percent_Identity=73.2804232804233, Blast_Score=581, Evalue=1e-167,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059
- InterPro:   IPR012696 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 41022; Mature: 41022

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILNNVSLILEDSVVSGSLEIVDGVIRSYSDRPTQLPAAIDGENGWLLPGLIELHTDNLD
CEECCEEEEEECCHHCCHHHHHHHHHHHCCCCCCCCCCEEECCCCEECCCEEEEECCCCH
KFFTPRPNVDWPAHSAMSSHDALMVACGITTVLDAVAVGDVRDGGHRLDNLQKMINAVVD
HHCCCCCCCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SQRAGLNRAEHRIHLRGELPYENTLPLFEALMAQPALSLVSLMDHSPGQRQFASREKYRE
HHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
YYQGKYHLSDPQMAAFEEEQVALSARWAGPNRSAIAAQCRERGIALASHDDATADHVAES
HHCCCEECCCCCHHHCCHHHEEEEEEECCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHH
QALGSVIAEFPTTEVAATASHQLGLQVLMGAPNIVRGGSHSGNVAAHHLASLGVLDILSS
HHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHCC
DYYPASLMDAAFRIAHDASNRFTLPQAVNLVTRNPARALGLNDRGVIAEGKRADLILARA
CCCCHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHHHCCCCCCCCEECCCCCCEEEEEE
HGENVYVQNVWRQGVRVF
CCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MILNNVSLILEDSVVSGSLEIVDGVIRSYSDRPTQLPAAIDGENGWLLPGLIELHTDNLD
CEECCEEEEEECCHHCCHHHHHHHHHHHCCCCCCCCCCEEECCCCEECCCEEEEECCCCH
KFFTPRPNVDWPAHSAMSSHDALMVACGITTVLDAVAVGDVRDGGHRLDNLQKMINAVVD
HHCCCCCCCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SQRAGLNRAEHRIHLRGELPYENTLPLFEALMAQPALSLVSLMDHSPGQRQFASREKYRE
HHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
YYQGKYHLSDPQMAAFEEEQVALSARWAGPNRSAIAAQCRERGIALASHDDATADHVAES
HHCCCEECCCCCHHHCCHHHEEEEEEECCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHH
QALGSVIAEFPTTEVAATASHQLGLQVLMGAPNIVRGGSHSGNVAAHHLASLGVLDILSS
HHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHCC
DYYPASLMDAAFRIAHDASNRFTLPQAVNLVTRNPARALGLNDRGVIAEGKRADLILARA
CCCCHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHHHCCCCCCCCEECCCCCCEEEEEE
HGENVYVQNVWRQGVRVF
CCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]