Click here to switch to the map view.

The map label for this gene is kdgM2 [H]

Identifier: 153947668

GI number: 153947668

Start: 1960838

End: 1961548

Strand: Reverse

Name: kdgM2 [H]

Synonym: YpsIP31758_1687

Alternate gene names: 153947668

Gene position: 1961548-1960838 (Counterclockwise)

Preceding gene: 153948392

Following gene: 153950541

Centisome position: 41.53

GC content: 40.65

Gene sequence:

>711_bases
ATGAAATTAAAATTAATTACTCTGGCAGTGGCAGCAGCAGCAGTATCCGTTATCAGTTTTAGTTCCGTTGCAACAACGAT
TGACTATCGACATGAAATGAAAGACACCAGTAAATCCGATCACAAAGACCGTTTACTGATCTCAAACCGTTTTGCGAATG
GTTTTGGTTTGTCCTTGGAAGGTAAGTGGGGCCAGCACAGCTCTGATACCACGCCAAATAAGCCATTCAATGAGCAGGTC
AGTAATGGGACCGAAATGGTGGCCAGTTATGTTTATAAATTCAATAACACCTTCCAGATCGAACCTGGTTTCTCATTAGA
CTCTACTTCAGATTCCAACAACTACCGTCCATATATCCGTGGAAAAGTGGCTTTCACTGATGATTTCTCAACGTCACTGC
GCTACCGTCCATACTACAAACGTAATCAACCTGCTCAGACTAAATCGACTGAGAAAGGACATGAGTTCACCATGTTATTT
GCTTATAACTTCTTGAAAGACTATTCAGCTGAATACGAATTAAACTACAAGAAGTCTGAAGACGAAATTCTGGCTAATAA
AGAAAAATACGAATGGGCACATGATGTAAAAATCGCCTACAAATGGGATAAAAACTGGAAACCCTATATGGCTATTGGTA
ATGTCCCAGGCAGTAAAGTAACTGACGAACGCCAAACTCGTTACCGCGTAGGTATCCAATACAGTTTCTAA

Upstream 100 bases:

>100_bases
TGAAACATTGTTTCTTTTTTTGTGGTTGCGCGTTTTGTTCATGTGTTGATTTTTATAGTTTTGTTGTTTTGAATAACCAT
AACTCTGGGATTATATAAAA

Downstream 100 bases:

>100_bases
ATATCGTGTCGTTATGAGTACCCTCATCATTATTTGTTAAGTTATGCCCATTCTCTGCATTATTTTGGGGAAAAGTTGAC
TCCCAGTCACTTTTCCCTTT

Product: oligogalacturonate-specific porin protein KdgM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKLKLITLAVAAAAVSVISFSSVATTIDYRHEMKDTSKSDHKDRLLISNRFANGFGLSLEGKWGQHSSDTTPNKPFNEQV
SNGTEMVASYVYKFNNTFQIEPGFSLDSTSDSNNYRPYIRGKVAFTDDFSTSLRYRPYYKRNQPAQTKSTEKGHEFTMLF
AYNFLKDYSAEYELNYKKSEDEILANKEKYEWAHDVKIAYKWDKNWKPYMAIGNVPGSKVTDERQTRYRVGIQYSF

Sequences:

>Translated_236_residues
MKLKLITLAVAAAAVSVISFSSVATTIDYRHEMKDTSKSDHKDRLLISNRFANGFGLSLEGKWGQHSSDTTPNKPFNEQV
SNGTEMVASYVYKFNNTFQIEPGFSLDSTSDSNNYRPYIRGKVAFTDDFSTSLRYRPYYKRNQPAQTKSTEKGHEFTMLF
AYNFLKDYSAEYELNYKKSEDEILANKEKYEWAHDVKIAYKWDKNWKPYMAIGNVPGSKVTDERQTRYRVGIQYSF
>Mature_236_residues
MKLKLITLAVAAAAVSVISFSSVATTIDYRHEMKDTSKSDHKDRLLISNRFANGFGLSLEGKWGQHSSDTTPNKPFNEQV
SNGTEMVASYVYKFNNTFQIEPGFSLDSTSDSNNYRPYIRGKVAFTDDFSTSLRYRPYYKRNQPAQTKSTEKGHEFTMLF
AYNFLKDYSAEYELNYKKSEDEILANKEKYEWAHDVKIAYKWDKNWKPYMAIGNVPGSKVTDERQTRYRVGIQYSF

Specific function: Porin specific for oligogalacturonides. Also required for full virulence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oligogalacturonate-specific porin kdgM (TC 1.B.35) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009331
- InterPro:   IPR003192 [H]

Pfam domain/function: PF06178 KdgM [H]

EC number: NA

Molecular weight: Translated: 27312; Mature: 27312

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKLITLAVAAAAVSVISFSSVATTIDYRHEMKDTSKSDHKDRLLISNRFANGFGLSLE
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEE
GKWGQHSSDTTPNKPFNEQVSNGTEMVASYVYKFNNTFQIEPGFSLDSTSDSNNYRPYIR
CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEE
GKVAFTDDFSTSLRYRPYYKRNQPAQTKSTEKGHEFTMLFAYNFLKDYSAEYELNYKKSE
EEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHHCCCCEEEECCCCC
DEILANKEKYEWAHDVKIAYKWDKNWKPYMAIGNVPGSKVTDERQTRYRVGIQYSF
HHHHCCCHHCCEEECEEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKLKLITLAVAAAAVSVISFSSVATTIDYRHEMKDTSKSDHKDRLLISNRFANGFGLSLE
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEE
GKWGQHSSDTTPNKPFNEQVSNGTEMVASYVYKFNNTFQIEPGFSLDSTSDSNNYRPYIR
CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEE
GKVAFTDDFSTSLRYRPYYKRNQPAQTKSTEKGHEFTMLFAYNFLKDYSAEYELNYKKSE
EEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHHCCCCEEEECCCCC
DEILANKEKYEWAHDVKIAYKWDKNWKPYMAIGNVPGSKVTDERQTRYRVGIQYSF
HHHHCCCHHCCEEECEEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11773048 [H]